BMRB Entry 17235

Name: Solution structure of a putative acyl carrier protein from Anaplasma phagocytophilum. Seattle Structural Genomics Center for Infectious Disease (SSGCID) target AnphA.01018.a
Published: 2010-10-20

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PDB ID: 2l4b
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_full, LACS
BMRB Entry DOI: doi:10.13018/BMR17235
MolProbity Validation Chart

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Nicholas Rego and David Koes
3Dmol.js: molecular visualization with WebGL
Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title:

Solution structure of a putative acyl carrier protein from Anaplasma phagocytophilum. Seattle Structural Genomics Center for Infectious Disease (SSGCID) target AnphA.01018.a

Deposition date:

2010-10-02

Original release date:

2010-10-20

Authors:

Buchko, Garry

Citation:

Citation: Buchko, Garry; Hewitt, Stephan; Napuli, Alberto; Van Voorhis, Wesley; Myler, Peter. "Solution structure of a putative acyl carrier protein from Anaplasma phagocytophilum, the bacterium responsible for human granulocytic ehrlichiosis." .

Assembly members:

Assembly members:
ACP18, polymer, 88 residues, Formula weight is not available

Natural source:

Natural source: Common Name: Anaplasma phagocytophilum Taxonomy ID: 948 Superkingdom: Eubacteria Kingdom: not available Genus/species: Anaplasma phagocytophilum

Experimental source:

Experimental source: Production method: recombinant technology Host organism: Escherichia coli Vector: AVA0421

Entity Sequences (FASTA):

Entity Sequences (FASTA):
ACP18: PGSMVSEEIKAQVMESVIGC LKLNDEQKQILSGTTNLAKD FNLDSLDFVDLIMSLEERFS LEISDEDAQKLETVDDICRY IASKSSDA

Data sets:

assigned_chemical_shifts
- assigned_chem_shift_list_1

Data type	Count
13C chemical shifts	370
15N chemical shifts	94
1H chemical shifts	583

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	ACP18	1

Entities:

Entity 1, ACP18 88 residues - Formula weight is not available

1

PRO

GLY

SER

MET

VAL

SER

GLU

ILE

LYS

2

ALA

GLN

VAL

MET

GLU

SER

VAL

ILE

GLY

CYS

3

LEU

LYS

LEU

ASN

ASP

GLU

GLN

LYS

GLN

ILE

4

LEU

SER

GLY

THR

ASN

LEU

ALA

LYS

ASP

5

PHE

ASN

LEU

ASP

SER

LEU

ASP

PHE

VAL

ASP

6

LEU

ILE

MET

SER

LEU

GLU

ARG

PHE

SER

7

LEU

GLU

ILE

SER

ASP

GLU

ASP

ALA

GLN

LYS

8

LEU

GLU

THR

VAL

ASP

ILE

CYS

ARG

TYR

9

ILE

ALA

SER

LYS

SER

ASP

ALA

Samples:

sample_1: ACP18, [U-100% 13C; U-100% 15N], 1 – 2 mM; sodium chloride 100 ± 3 mM; TRIS 20 ± 1 mM; H2O 93%; D2O 7%

sample_2: ACP18, [U-98% 15N], 1 – 2 mM; sodium chloride 100 ± 3 mM; TRIS 20 ± 1 mM; D2O 100%

sample_conditions_1: ionic strength: 0.12 M; pH: 7; pressure: 1 atm; temperature: 293 K

Experiments:

Name	Sample	Sample state	Sample conditions
2D 1H-15N HSQC	sample_1	isotropic	sample_conditions_1
2D 1H-13C HSQC	sample_1	isotropic	sample_conditions_1
3D HNCACB	sample_1	isotropic	sample_conditions_1
3D HN(COCA)CB	sample_1	isotropic	sample_conditions_1
3D C(CO)NH	sample_1	isotropic	sample_conditions_1
3D HNCO	sample_1	isotropic	sample_conditions_1
3D 1H-15N NOESY	sample_1	isotropic	sample_conditions_1
3D 1H-13C NOESY	sample_1	isotropic	sample_conditions_1
deuterium exchange	sample_2	isotropic	sample_conditions_1

Software:

CYANA v2.1, Guntert, Mumenthaler and Wuthrich - structure solution

FELIX v2007, Accelrys Software Inc. - processing

SPARKY v3.115, Goddard - data analysis, peak picking

PSVS v1.1, Bhattacharya and Montelione - data analysis

NMR spectrometers:

Varian INOVA 600 MHz
Varian INOVA 750 MHz

PDB	2L4B
GB	ABD44176 AGR78947 AGR80194 AGR81449 EOA61179
REF	WP_044104281 WP_044105205