BMRB Entry 17122

Chem Shift validation: AVS_full
BMRB Entry DOI: doi:10.13018/BMR17122

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Title:
Solution-state NMR Investigations of Triosephosphate Isomerase Active Site Loop Motion: Ligand Release in Relation to Active Site Loop Dynamics
Deposition date:
2010-08-11
Original release date:
2016-06-09
Authors:
Rozovsky, Sharon; Jogl, Gerwald; Tong, Liang; McDermott, Ann
Citation:

Citation: Rozovsky, Sharon; Jogl, Gerwald; Tong, Liang; McDermott, Ann. "Solution-state NMR Investigations of Triosephosphate Isomerase Active Site Loop Motion: Ligand Release in Relation to Active Site Loop Dynamics"  J. Mol. Biol. 310, 271-280 (2001).
PubMed: 11419952

Assembly members:

Assembly members:
TIM, polymer, 247 residues, Formula weight is not available
G3P, non-polymer, 172.074 Da.

Natural source:

Natural source:   Common Name: Baker's yeast   Taxonomy ID: 4932   Superkingdom: Eukaryota   Kingdom: Fungi   Genus/species: Saccharomyces cerevisiae

Experimental source:

Experimental source:   Production method: purified from the natural source

Entity Sequences (FASTA):

Entity Sequences (FASTA):
TIM: ARTFFVGGNFKLNGSKQSIK EIVERLNTASIPENVEVVIC PPATYLDYSVSLVKKPQVTV GAQNAYLKASGAFTGENSVD QIKDVGAKYVILGHSERRSY FHEDDKFIADKTKFALGQGV GVILCIGETLEEKKAGKTLD VVERQLNAVLEEVKDFTNVV VAYEPVWXIGTGLAATPEDA QDIHASIRKFLASKLGDKAA SELRILYGGSANGSNAVTFK DKADVDGFLVGGASLKPEFV DIINSRN

Data typeCount

Additional metadata:

  • Assembly
  • Samples and Experiments
  • Software
  • Spectrometers
  • Hide all

Assembly:

Entity Assembly IDEntity NameEntity ID
1TIM1
2G3P2

Entities:

Entity 1, TIM 247 residues - Formula weight is not available

X=FTR

1   ALAARGTHRPHEPHEVALGLYGLYASNPHE
2   LYSLEUASNGLYSERLYSGLNSERILELYS
3   GLUILEVALGLUARGLEUASNTHRALASER
4   ILEPROGLUASNVALGLUVALVALILECYS
5   PROPROALATHRTYRLEUASPTYRSERVAL
6   SERLEUVALLYSLYSPROGLNVALTHRVAL
7   GLYALAGLNASNALATYRLEULYSALASER
8   GLYALAPHETHRGLYGLUASNSERVALASP
9   GLNILELYSASPVALGLYALALYSTYRVAL
10   ILELEUGLYHISSERGLUARGARGSERTYR
11   PHEHISGLUASPASPLYSPHEILEALAASP
12   LYSTHRLYSPHEALALEUGLYGLNGLYVAL
13   GLYVALILELEUCYSILEGLYGLUTHRLEU
14   GLUGLULYSLYSALAGLYLYSTHRLEUASP
15   VALVALGLUARGGLNLEUASNALAVALLEU
16   GLUGLUVALLYSASPPHETHRASNVALVAL
17   VALALATYRGLUPROVALTRPFTRILEGLY
18   THRGLYLEUALAALATHRPROGLUASPALA
19   GLNASPILEHISALASERILEARGLYSPHE
20   LEUALASERLYSLEUGLYASPLYSALAALA
21   SERGLULEUARGILELEUTYRGLYGLYSER
22   ALAASNGLYSERASNALAVALTHRPHELYS
23   ASPLYSALAASPVALASPGLYPHELEUVAL
24   GLYGLYALASERLEULYSPROGLUPHEVAL
25   ASPILEILEASNSERARGASN

Entity 2, G3P - C3 H9 O6 P - 172.074 Da.

1   G3P

Samples:

sample_1: TIM 1.2 mM; Tris-HCl 50 mM; sodium chloride 50 mM; G3P 0-10 mM

sample_2: TIM 2.1 mM; Tris-HCl 50 mM; sodium chloride 50 mM; G3P0 – 5.75 mM; H2O 90%; D2O 10%

sample_conditions_1: ionic strength: 50 mM; pH: 6.8; pressure: 1 atm; temperature: 273 K

sample_conditions_2: ionic strength: 50 mM; pH: 6.8; pressure: 1 atm; temperature: 303 K

Experiments:

NameSampleSample stateSample conditions
19F NMRsample_1isotropicsample_conditions_1
19F NMRsample_1isotropicsample_conditions_2
31P NMRsample_2isotropicsample_conditions_1
31P NMRsample_2isotropicsample_conditions_2

Software:

MOLSCRIPT, Kraulis, 1991 - visualization

RASTER3D, Merritt & Bacon, 1997 - visualization

NMR spectrometers:

  • Bruker DRX 300 MHz
  • Bruker DRX 400 MHz
  • Bruker DRX 600 MHz

Related Database Links:

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