BMRB Entry 16806

Name: Solution NMR Structure of the Slr1183 protein from Synechocystis sp. PCC 6803. Northeast Structural Genomics Consortium Target Target SgR145.
Published: 2010-04-28

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PDB ID: 2n47
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_full, LACS
BMRB Entry DOI: doi:10.13018/BMR16806
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Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title:

Solution NMR Structure of the Slr1183 protein from Synechocystis sp. PCC 6803. Northeast Structural Genomics Consortium Target Target SgR145.

Deposition date:

2010-03-31

Original release date:

2010-04-28

Authors:

Rossi, Paolo; Forouhar, F.; Lange, O.; Lee, H.; Lemak, A; Belote, R.; Ciccosanti, C.; Foote, Erica; Sahdev, Seema; Acton, T.; Xiao, R.; Everett, J.; Montelione, Gaetano

Citation:

Citation: Rossi, Paolo; Forouhar, Farhad; Lange, Oliver; Lee, Hsiau; Acton, Thomas; Xiao, Rong; Montelione, Gaetano. "Solution NMR Structure of the Slr1183 protein from Synechocystis sp. PCC 6803. Northeast Structural Genomics Consortium Target Target SgR145." To be published ., .-..

Assembly members:

Assembly members:
SgR145, polymer, 202 residues, 22403.449 Da.

Natural source:

Natural source: Common Name: Synechocystis sp. PCC 6803 Taxonomy ID: 1148 Superkingdom: Bacteria Kingdom: not available Genus/species: Synechocystis not available

Experimental source:

Experimental source: Production method: recombinant technology Host organism: Escherichia coli Vector: BL21

Entity Sequences (FASTA):

Entity Sequences (FASTA):
SgR145: MWDERFSQSEYVYGTEPNDF LVSVANQIPQGKILCLAEGE GRNACFLASLGYEVTAVDQS SVGLAKAKQLAQEKGVKITT VQSNLADFDIVADAWEGIVS IFCHLPSSLRQQLYPKVYQG LKPGGVFILEGFAPEQLQYN TGGPKDLDLLPKLETLQSEL PSLNWLIANNLERNLDEGAY HQGKAALIQLLGQKLEHHHH HH

Data sets:

assigned_chemical_shifts
- assigned_chem_shift_list_1
spectral_peak_list

Data type	Count
13C chemical shifts	567
15N chemical shifts	159
1H chemical shifts	423

Time Domain Data

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	SgR145	1

Entities:

Entity 1, SgR145 202 residues - 22403.449 Da.

1

MET

TRP

ASP

GLU

ARG

PHE

SER

GLN

SER

GLU

2

TYR

VAL

TYR

GLY

THR

GLU

PRO

ASN

ASP

PHE

3

LEU

VAL

SER

VAL

ALA

ASN

GLN

ILE

PRO

GLN

4

GLY

LYS

ILE

LEU

CYS

LEU

ALA

GLU

GLY

GLU

5

GLY

ARG

ASN

ALA

CYS

PHE

LEU

ALA

SER

LEU

6

GLY

TYR

GLU

VAL

THR

ALA

VAL

ASP

GLN

SER

7

SER

VAL

GLY

LEU

ALA

LYS

ALA

LYS

GLN

LEU

8

ALA

GLN

GLU

LYS

GLY

VAL

LYS

ILE

THR

9

VAL

GLN

SER

ASN

LEU

ALA

ASP

PHE

ASP

ILE

10

VAL

ALA

ASP

ALA

TRP

GLU

GLY

ILE

VAL

SER

11

ILE

PHE

CYS

HIS

LEU

PRO

SER

LEU

ARG

12

GLN

LEU

TYR

PRO

LYS

VAL

TYR

GLN

GLY

13

LEU

LYS

PRO

GLY

VAL

PHE

ILE

LEU

GLU

14

GLY

PHE

ALA

PRO

GLU

GLN

LEU

GLN

TYR

ASN

15

THR

GLY

PRO

LYS

ASP

LEU

ASP

LEU

16

PRO

LYS

LEU

GLU

THR

LEU

GLN

SER

GLU

LEU

17

PRO

SER

LEU

ASN

TRP

LEU

ILE

ALA

ASN

18

LEU

GLU

ARG

ASN

LEU

ASP

GLU

GLY

ALA

TYR

19

HIS

GLN

GLY

LYS

ALA

LEU

ILE

GLN

LEU

20

LEU

GLY

GLN

LYS

LEU

GLU

HIS

21

HIS

Samples:

sample: SgR145, [U-100% 13C; U-100% 15N], 1.1 mM; H2O 95%; D2O 5%

sample_conditions_1: pH: 6.5; pressure: 1 atm; temperature: 298 K

Experiments:

Name	Sample	Sample state	Sample conditions
2D 1H-15N HSQC	sample	isotropic	sample_conditions_1
2D 1H-13C HSQC	sample	isotropic	sample_conditions_1
3D HNCO	sample	isotropic	sample_conditions_1
3D CBCA(CO)NH	sample	isotropic	sample_conditions_1
3D HNCACB	sample	isotropic	sample_conditions_1
2D 1H-15N HSQC	sample	anisotropic	sample_conditions_1
2D 1H-15N HSQC	sample	anisotropic	sample_conditions_1
3D HNCA(CO)	sample	isotropic	sample_conditions_1
3D HNCA	sample	isotropic	sample_conditions_1
3D 1H-13C NOESY	sample	isotropic	sample_conditions_1
3D 1H-15N NOESY	sample	isotropic	sample_conditions_1
3D 1H-13C HSQC_NOESY_HSQC	sample	isotropic	sample_conditions_1
3D 1H-15N HSQC_NOESY_HSQC	sample	isotropic	sample_conditions_1
3D 1H-13C-15N HSQC_NOESY_HSQC	sample	isotropic	sample_conditions_1
3D 1H-15N-13C HSQC_NOESY_HSQC	sample	isotropic	sample_conditions_1
3D HCCH-TOCSY	sample	isotropic	sample_conditions_1
1D 15N T1	sample	isotropic	sample_conditions_1
1D 15N T2 CPMG	sample	isotropic	sample_conditions_1
2D- HET NOE	sample	isotropic	sample_conditions_1

Software:

CYANA v3.0, Guntert, Mumenthaler and Wuthrich - geometry optimization, refinemen, structure solution

AutoStruct v2.1, Huang, Tejero, Powers and Montelione - data analysis, refinement

AutoAssign v2.1, Zimmerman, Moseley, Kulikowski and Montelione - chemical shift assignment, data analysis

NMRPipe, Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax - processing

XEASY, Bartels et al. - chemical shift assignment, data analysis, peak picking

TOPSPIN, Bruker Biospin - collection

VNMRJ, Varian - collection

CNS, Brunger, Adams, Clore, Gros, Nilges and Read - geometry optimization, refinemen, structure solution

NMR spectrometers:

Bruker Avance 800 MHz
Varian INOVA 600 MHz

PDB	2KW5 2N47 3MER
DBJ	BAA18831 BAK51873 BAL30871 BAL34040 BAL37209
GB	AGF53380 ALJ69250
REF	WP_010874311