BMRB Entry 16774

Name: Solution structure of the Mycobacterium tuberculosis protein Rv0543c, a member of the DUF3349 superfamily. Seattle Structural Genomics Center for Infectious Disease (SSGCID) target MytuD.17112.a
Published: 2010-03-22

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PDB ID: 2kvc
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_anomalous, AVS_full, LACS
BMRB Entry DOI: doi:10.13018/BMR16774
MolProbity Validation Chart

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Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title:

Solution structure of the Mycobacterium tuberculosis protein Rv0543c, a member of the DUF3349 superfamily. Seattle Structural Genomics Center for Infectious Disease (SSGCID) target MytuD.17112.a

Deposition date:

2010-03-12

Original release date:

2010-03-22

Authors:

Buchko, Garry; Kim, Chang; Thomas, Terwilliger

Citation:

Citation: Buchko, Garry; Phan, Isabelle; Myler, Peter; Terwilliger, Thomas; Kim, Chang-Yub. "Inaugural structure from the DUF3349 superfamily of proteins, Mycobacterium tuberculosis Rv0543c." Arch. Biochem. Biophys. 506, 150-156 (2011).
PubMed: 21144816

Assembly members:

Assembly members:
Rv0543c, polymer, 103 residues, Formula weight is not available

Natural source:

Natural source: Common Name: Mycobacterium tuberculosis Taxonomy ID: 1773 Superkingdom: Bacteria Kingdom: not available Genus/species: Mycobacterium tuberculosis

Experimental source:

Experimental source: Production method: recombinant technology Host organism: Escherichia coli Vector: pET28b

Entity Sequences (FASTA):

Entity Sequences (FASTA):
Rv0543c: GSHMNRFLTSIVAWLRAGYP EGIPPTDSFAVLALLCRRLS HDEVKAVANELMRLGDFDQI DIGVVITHFTDELPSPEDVE RVRARLAAQGWPLDDVRDRE EHA

Data sets:

assigned_chemical_shifts
- assigned_chem_shift_list_1

Data type	Count
13C chemical shifts	418
15N chemical shifts	94
1H chemical shifts	671

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	Rv0543c	1

Entities:

Entity 1, Rv0543c 103 residues - Formula weight is not available

Residues 1-3 are non-natural residues that remain after cleavage of an affinity tag.

1

GLY

SER

HIS

MET

ASN

ARG

PHE

LEU

THR

SER

2

ILE

VAL

ALA

TRP

LEU

ARG

ALA

GLY

TYR

PRO

3

GLU

GLY

ILE

PRO

THR

ASP

SER

PHE

ALA

4

VAL

LEU

ALA

LEU

CYS

ARG

LEU

SER

5

HIS

ASP

GLU

VAL

LYS

ALA

VAL

ALA

ASN

GLU

6

LEU

MET

ARG

LEU

GLY

ASP

PHE

ASP

GLN

ILE

7

ASP

ILE

GLY

VAL

ILE

THR

HIS

PHE

THR

8

ASP

GLU

LEU

PRO

SER

PRO

GLU

ASP

VAL

GLU

9

ARG

VAL

ARG

ALA

ARG

LEU

ALA

GLN

GLY

10

TRP

PRO

LEU

ASP

VAL

ARG

ASP

ARG

GLU

11

GLU

HIS

ALA

Samples:

sample_1: Rv0543c 1-2 ± 0.2 mM; sodium chloride 300 ± 10 mM; TRIS 20 ± 2 mM; DTT 1 ± 0.2 mM

sample_2: Rv0543c 1-2 ± 0.2 mM; sodium chloride 300 ± 10 mM; TRIS 20 ± 2 mM; DTT 1 ± 0.2 mM

sample_conditions_1: ionic strength: 300 mM; pH: 7.0; pressure: 1 atm; temperature: 293 K

Experiments:

Name	Sample	Sample state	Sample conditions
2D 1H-15N HSQC	sample_1	isotropic	sample_conditions_1
3D HNCACB	sample_1	isotropic	sample_conditions_1
3D C(CO)NH	sample_1	isotropic	sample_conditions_1
3D HN(COCA)CB	sample_1	isotropic	sample_conditions_1
3D HNCO	sample_1	isotropic	sample_conditions_1
2D 1H-13C HSQC	sample_1	isotropic	sample_conditions_1
3D 1H-15N NOESY	sample_1	isotropic	sample_conditions_1
3D 1H-13C NOESY	sample_1	isotropic	sample_conditions_1
2D 1H-15N HSQC	sample_2	isotropic	sample_conditions_1
3D H(CCO)NH	sample_1	isotropic	sample_conditions_1

Software:

CYANA v2.1, Guntert, Mumenthaler and Wuthrich - structure solution

FELIX v2007, Accelrys Software Inc. - processing

SPARKY v3.115, Goddard - data analysis

PSVS v1.1, Bhattacharya and Montelione - data analysis

CNS v1.1, Brunger, Adams, Clore, Gros, Nilges and Read - refinement

NMR spectrometers:

Varian INOVA 600 MHz
Varian INOVA 750 MHz
Varian UnityPlus 500 MHz

PDB	2KVC
DBJ	BAH24852 BAL64411 BAQ04425 GAA44326
EMBL	CAL70572 CCC25622 CCC42886 CCC63147 CCE36083
GB	ABQ72273 ABR04897 ACT23581 AEB02684 AEJ45701
REF	NP_215057 NP_854218 WP_003402896 WP_003909241 WP_024456652