BMRB Entry 16745

Name: 1H and 13C Chemical Shift Assignments for Antimicrobial Peptide Sm-AMP-1.1a
Published: 2012-08-03

Click here to enlarge.

PDB ID: 2kus
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_full
BMRB Entry DOI: doi:10.13018/BMR16745
MolProbity Validation Chart

NMR-STAR file interactive viewer.
NMR-STAR v3 text file.
XML gzip file.
RDF gzip file.
All files associated with the entry

Nicholas Rego and David Koes
3Dmol.js: molecular visualization with WebGL
Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

Select model:

I am color blind

Download raw data. Direct link to this display. Help

Title:

1H and 13C Chemical Shift Assignments for Antimicrobial Peptide Sm-AMP-1.1a

Deposition date:

2010-02-26

Original release date:

2012-08-03

Authors:

Bozin, Timur; Bocharov, Eduard; Sobol, Vladimir; Vassilevski, Alexander; Arseniev, Alexander

Citation:

Citation: Vassilevski, Alexander; Musolyamov, Alexander; Nikonorova, Alexandra; Finkina, Ekaterina; Slavokhotova, Anna; Shagin, Dmitry; Bozin, Timur; Bocharov, Eduard; Ovchinnikova, Tatyana; Arseniev, Alexander; Babakov, Alexei; Lukyanov, Sergey; Grishin, Eugene; Egorov, Tsezi. "Common chickweed (Stellaria media) antifungal peptides with chitin-binding domain provide unique plant defense strategy" J. Biol. Chem. ., .-..

Assembly members:

Assembly members:
Sm-AMP-1.1a, polymer, 35 residues, Formula weight is not available

Natural source:

Natural source: Common Name: Stellaria media Taxonomy ID: 13274 Superkingdom: Eukaryota Kingdom: Viridiplantae Genus/species: Stellaria media

Experimental source:

Experimental source: Production method: purified from the natural source Host organism: Stellaria media

Entity Sequences (FASTA):

Entity Sequences (FASTA):
Sm-AMP-1.1a: SGPNGQCGPGWGGCRGGLCC SQYGYCGSGPKYCAH

Data sets:

assigned_chemical_shifts
- assigned_chem_shift_list_1
coupling_constants
- coupling_constant_list_1

Data type	Count
13C chemical shifts	90
1H chemical shifts	190
coupling constants	60

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
Hide all

Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	Sm-AMP-1.1a monomer	1

Entities:

Entity 1, Sm-AMP-1.1a monomer 35 residues - Formula weight is not available

1

SER

GLY

PRO

ASN

GLY

GLN

CYS

GLY

PRO

GLY

2

TRP

GLY

CYS

ARG

GLY

LEU

CYS

3

SER

GLN

TYR

GLY

TYR

CYS

GLY

SER

GLY

PRO

4

LYS

TYR

CYS

ALA

HIS

Samples:

sample_1: Sm-AMP-1.1a 0.5 mM; H2O 90%; D2O 10%; NaCl 10 mM

sample_2: Sm-AMP-1.1a 0.5 mM; D2O 100%; NaCl 10 mM

sample_conditions_1: ionic strength: 20 mM; pH: 4.5; pressure: 1 atm; temperature: 303 K

Experiments:

Name	Sample	Sample state	Sample conditions
2D DQF-COSY	sample_1	isotropic	sample_conditions_1
2D 1H-1H TOCSY	sample_1	isotropic	sample_conditions_1
2D 1H-1H NOESY	sample_1	isotropic	sample_conditions_1
2D DQF-COSY	sample_2	isotropic	sample_conditions_1
2D 1H-1H TOCSY	sample_2	isotropic	sample_conditions_1
2D 1H-1H NOESY	sample_2	isotropic	sample_conditions_1
2D 1H-13C HSQC	sample_2	isotropic	sample_conditions_1

Software:

TOPSPIN v2.1, Bruker Biospin - collection

XEASY, Bartels et al. - chemical shift assignment, data analysis

NMRPipe, Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax - data analysis

NMR spectrometers:

Bruker Avance 700 MHz