BMRB Entry 16648

Name: Solution NMR Structure of a Conserved Hypothetical Membrane Lipoprotein Obtained from Ureaplasma parvum: Northeast Structural Genomics Consortium Target UuR17A (139-239)
Published: 2010-07-26

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PDB ID: 2krt
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_full, LACS
BMRB Entry DOI: doi:10.13018/BMR16648
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Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title:

Solution NMR Structure of a Conserved Hypothetical Membrane Lipoprotein Obtained from Ureaplasma parvum: Northeast Structural Genomics Consortium Target UuR17A (139-239)

Deposition date:

2009-12-22

Original release date:

2010-07-26

Authors:

Mani, R.; Swapna, G.V.T; Janjua, H.; Ciccosanti, C.; Huang, Y. J.; Patel, D. J.; Xiao, R.; Acton, T.; Everett, J.; Montelione, G.T.

Citation:

Citation: Mani, Rajeswari; Vorobiev, Sergey; Swapna, G.; Neely, Helen; Janjua, Haleema; Ciccosanti, Colleen; Xiao, Rong; Acton, Thomas; Everett, John; Hunt, John; Montelione, Gaetano. "Solution NMR and X-ray crystal structures of membrane-associated Lipoprotein-17 domain reveal a novel fold." J. Struct. Funct. Genomics 12, 27-32 (2011).
PubMed: 21153711

Assembly members:

Assembly members:
UuR17A,_Lipoprotein, polymer, 121 residues, 14356.324 Da.

Natural source:

Natural source: Common Name: Ureaplasma parvum Taxonomy ID: 134821 Superkingdom: Bacteria Kingdom: not available Genus/species: Ureaplasma parvum

Experimental source:

Experimental source: Production method: recombinant technology Host organism: Escherichia coli Vector: pET 21-23C

Entity Sequences (FASTA):

Entity Sequences (FASTA):
UuR17A,_Lipoprotein: MLSQANEDFKKIVNNIRLKD TFDFKLAAFPNQNYDQLLPS QIYKNYYQGIEIQQHKYQNE LDIKIINFLYPDGDFGSANK NGTLKLSLMLTDKKNNQVYY KLLEVSGFKSNPYLEHHHHH H

Data sets:

assigned_chemical_shifts
- assigned_chem_shift_list_1

Data type	Count
13C chemical shifts	508
15N chemical shifts	120
1H chemical shifts	775

Time Domain Data

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
Hide all

Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	UuR17A	1

Entities:

Entity 1, UuR17A 121 residues - 14356.324 Da.

Last 8 residues LEHHHHHH is a C-terminal tag

1

MET

LEU

SER

GLN

ALA

ASN

GLU

ASP

PHE

LYS

2

LYS

ILE

VAL

ASN

ILE

ARG

LEU

LYS

ASP

3

THR

PHE

ASP

PHE

LYS

LEU

ALA

PHE

PRO

4

ASN

GLN

ASN

TYR

ASP

GLN

LEU

PRO

SER

5

GLN

ILE

TYR

LYS

ASN

TYR

GLN

GLY

ILE

6

GLU

ILE

GLN

HIS

LYS

TYR

GLN

ASN

GLU

7

LEU

ASP

ILE

LYS

ILE

ASN

PHE

LEU

TYR

8

PRO

ASP

GLY

ASP

PHE

GLY

SER

ALA

ASN

LYS

9

ASN

GLY

THR

LEU

LYS

LEU

SER

LEU

MET

LEU

10

THR

ASP

LYS

ASN

GLN

VAL

TYR

11

LYS

LEU

GLU

VAL

SER

GLY

PHE

LYS

SER

12

ASN

PRO

TYR

LEU

GLU

HIS

13

HIS

Samples:

sample_1: UuR17A, Lipoprotein, [U-100% 13C; U-100% 15N], 0.91 ± 0.2 mM; NaN3 0.02%; DDT 100 mM; CaCl2 5 mM; NaCl 10 mM; MES 20 mM

sample_2: UuR17A, Lipoprotein, [U-100% 13C; U-100% 15N], 0.91 ± 0.2 mM; NaN3 0.02%; DDT 100 mM; CaCl2 5 mM; NaCl 10 mM; MES 20 mM

sample_3: UuR17A, Lipoprotein, [U-10% 13C; U-99% 15N], 0.7 ± 0.2 mM; NaN3 0.02%; DDT 100 mM; CaCl2 5 mM; NaCl 10 mM; MES 20 mM

sample_conditions_1: ionic strength: 15 mM; pH: 6.5; pressure: 1 atm; temperature: 298 K

Experiments:

Name	Sample	Sample state	Sample conditions
2D 1H-15N HSQC	sample_1	isotropic	sample_conditions_1
2D 1H-13C HSQC	sample_1	isotropic	sample_conditions_1
3D 1H-15N/13C simultaneous NOESY	sample_1	isotropic	sample_conditions_1
3D 1H-13C arom NOESY	sample_1	isotropic	sample_conditions_1
2D 1H-15N HSQC	sample_2	isotropic	sample_conditions_1
2D 1H-13C HSQC	sample_2	isotropic	sample_conditions_1
3D CBCA(CO)NH	sample_2	isotropic	sample_conditions_1
3D HBHA(CO)NH	sample_2	isotropic	sample_conditions_1
3D HNCO	sample_2	isotropic	sample_conditions_1
3D HNCA	sample_2	isotropic	sample_conditions_1
3D HNCACB	sample_2	isotropic	sample_conditions_1
(4,3)D GFT-CBCACACONHN	sample_2	isotropic	sample_conditions_1
(4,3)D GFT-HNNCABCA	sample_2	isotropic	sample_conditions_1
3D CCH-TOCSY	sample_2	isotropic	sample_conditions_1
3D HCCH TOCSY	sample_2	isotropic	sample_conditions_1
3D CCCONH TOCSY	sample_2	isotropic	sample_conditions_1
3D HNHA	sample_3	isotropic	sample_conditions_1
Het NOE sat	sample_3	isotropic	sample_conditions_1
Het NOE no sat	sample_3	isotropic	sample_conditions_1

Software:

CNS v2.0.6, Brunger, Adams, Clore, Gros, Nilges and Read - refinement

CYANA v3.0, Guntert, Mumenthaler and Wuthrich - structure solution

AutoStruct v2.2.1, Huang, Tejero, Powers and Montelione - structure solution

PINE v1.0, Bahrami, Markley, Assadi, and Eghbalnia - chemical shift assignment

AutoAssign v2.2.1, Zimmerman, Moseley, Kulikowski and Montelione - chemical shift assignment

NMR spectrometers:

Bruker Avance 800 MHz
Varian INOVA 600 MHz
Varian INOVA 500 MHz

PDB	2KRT
DBJ	BAO73398
EMBL	CPS23611
GB	AAF30450 ACA32833 ACI60006 EDT48851 EDT49831
PIR	B82940
REF	WP_004026166 WP_004026422 WP_004026736 WP_004027175 WP_004027386
SP	Q9PRA0
AlphaFold	Q9PRA0