BMRB Entry 16598

Name: 1H, 13C and 15N backbone resonance assignments of cTEM-17m, a TEM-1/PSE-4 class A beta-lactamases chimera
Published: 2010-05-05

Chem Shift validation: AVS_anomalous, AVS_full, LACS
BMRB Entry DOI: doi:10.13018/BMR16598

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Nicholas Rego and David Koes
3Dmol.js: molecular visualization with WebGL
Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title:

1H, 13C and 15N backbone resonance assignments of cTEM-17m, a TEM-1/PSE-4 class A beta-lactamases chimera

Deposition date:

2009-11-06

Original release date:

2010-05-05

Authors:

Morin, Sebastien; Clouthier, Christopher; Gobeil, Sophie; Gagne, Stephane; Pelletier, Joelle

Citation:

Citation: Morin, Sebastien; Clouthier, Christopher; Gobeil, Sophie; Pelletier, Joelle; Gagne, Stephane. "Backbone resonance assignments of an artificially engineered TEM-1/PSE-4 Class A -lactamase chimera." Biomol. NMR Assignments 4, 127-130 (2010).
PubMed: 20383614

Assembly members:

Assembly members:
cTEM-17m, polymer, 263 residues, 28838.9 Da.

Natural source:

Natural source: Common Name: not available Taxonomy ID: not available Superkingdom: not available Kingdom: not available Genus/species: not available not available

Experimental source:

Experimental source: Production method: recombinant technology Host organism: Escherichia coli Vector: pET24

Entity Sequences (FASTA):

Entity Sequences (FASTA):
cTEM-17m: HPETLVKVKDAEDQLGARVG YIELDLNSGKILESFRPEER FPMMSTFKVLLCGAVLSRVD AGQEQLGRRIHYSQNDLVEY SPVTEKHLTDGMTVRELCSA AITMSDNTAANLLLTTIGGP KELTDFLRQIGDKETRLDRI EPDLNEGKLGDLRDTTTPKA IASTLRKLLTGELLTLASRQ QLIDWMEADKVAGPLLRSAL PAGWFIADKSGAGERGSRGI IAALGPDGKPSRIVVIYTTG SQATMDERNRQIAEIGASLI KHW

Data sets:

assigned_chemical_shifts
- assigned_chem_shift_list_1

Data type	Count
13C chemical shifts	680
15N chemical shifts	228
1H chemical shifts	228

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	cTEM-17m	1

Entities:

Entity 1, cTEM-17m 263 residues - 28838.9 Da.

This is the Ambler numbering scheme used for class A beta-lactamases.

1

HIS

PRO

GLU

THR

LEU

VAL

LYS

VAL

LYS

ASP

2

ALA

GLU

ASP

GLN

LEU

GLY

ALA

ARG

VAL

GLY

3

TYR

ILE

GLU

LEU

ASP

LEU

ASN

SER

GLY

LYS

4

ILE

LEU

GLU

SER

PHE

ARG

PRO

GLU

ARG

5

PHE

PRO

MET

SER

THR

PHE

LYS

VAL

LEU

6

LEU

CYS

GLY

ALA

VAL

LEU

SER

ARG

VAL

ASP

7

ALA

GLY

GLN

GLU

GLN

LEU

GLY

ARG

ILE

8

HIS

TYR

SER

GLN

ASN

ASP

LEU

VAL

GLU

TYR

9

SER

PRO

VAL

THR

GLU

LYS

HIS

LEU

THR

ASP

10

GLY

MET

THR

VAL

ARG

GLU

LEU

CYS

SER

ALA

11

ALA

ILE

THR

MET

SER

ASP

ASN

THR

ALA

12

ASN

LEU

THR

ILE

GLY

PRO

13

LYS

GLU

LEU

THR

ASP

PHE

LEU

ARG

GLN

ILE

14

GLY

ASP

LYS

GLU

THR

ARG

LEU

ASP

ARG

ILE

15

GLU

PRO

ASP

LEU

ASN

GLU

GLY

LYS

LEU

GLY

16

ASP

LEU

ARG

ASP

THR

PRO

LYS

ALA

17

ILE

ALA

SER

THR

LEU

ARG

LYS

LEU

THR

18

GLY

GLU

LEU

THR

LEU

ALA

SER

ARG

GLN

19

GLN

LEU

ILE

ASP

TRP

MET

GLU

ALA

ASP

LYS

20

VAL

ALA

GLY

PRO

LEU

ARG

SER

ALA

LEU

21

PRO

ALA

GLY

TRP

PHE

ILE

ALA

ASP

LYS

SER

22

GLY

ALA

GLY

GLU

ARG

GLY

SER

ARG

GLY

ILE

23

ILE

ALA

LEU

GLY

PRO

ASP

GLY

LYS

PRO

24

SER

ARG

ILE

VAL

ILE

TYR

THR

GLY

25

SER

GLN

ALA

THR

MET

ASP

GLU

ARG

ASN

ARG

26

GLN

ILE

ALA

GLU

ILE

GLY

ALA

SER

LEU

ILE

27

LYS

HIS

TRP

Samples:

sample_1: H2O 90 ± 1 %; D2O 10 ± 1 %; imidazole 0.3 ± 0.02 mM; sodium azide 0.1 ± 0.005 %; cTEM-17m, [U-98% 15N], 0.4 ± 0.05 mM

sample_2: H2O 90 ± 1 %; D2O 10 ± 1 %; imidazole 0.3 ± 0.02 mM; sodium azide 0.1 ± 0.005 %; cTEM-17m, [U-98% 13C; U-98% 15N], 0.4 ± 0.05 mM

sample_conditions_1: ionic strength: 0 M; pH: 6.7; pressure: 1 atm; temperature: 304.65 K

Experiments:

Name	Sample	Sample state	Sample conditions
2D 1H-15N HSQC	sample_1	isotropic	sample_conditions_1
3D-TROSY-HNCO	sample_2	isotropic	sample_conditions_1
3D-TROSY-HNCA	sample_2	isotropic	sample_conditions_1
3D-TROSY-HN(CO)CA	sample_2	isotropic	sample_conditions_1
3D-TROSY-HNCACB	sample_2	isotropic	sample_conditions_1
3D-TROSY-CBCA(CO)NH	sample_2	isotropic	sample_conditions_1
3D-TROSY-(HN)CO(CO)NH	sample_2	isotropic	sample_conditions_1

Software:

NMRPipe v3.0, Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax - processing

Smartnotebook v5.1.3, PENCE (The Canadian Protein Engineering Network - chemical shift assignment

NMRView v5.2.2, Johnson, One Moon Scientific - chemical shift assignment, data analysis, peak picking

VNMRJ v2.1_B, Varian - collection

NMR spectrometers:

Varian INOVA 600 MHz