BMRB Entry 16413

Name: C17orf37 Human 9606 Eukaryota Matazoa Homo sapiens
Published: 2010-06-22

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PDB ID: 2ljk
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_full, LACS
BMRB Entry DOI: doi:10.13018/BMR16413
MolProbity Validation Chart

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Nicholas Rego and David Koes
3Dmol.js: molecular visualization with WebGL
Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title:

C17orf37 Human 9606 Eukaryota Matazoa Homo sapiens

Deposition date:

2009-07-23

Original release date:

2010-06-22

Authors:

Yang, Chun-Jiun; Huang, Lin-Ya; Chang, Yu-Yung; Shen, Tang-Long; Hsu, Chun-Hua; Chang, Chi-Fon

Citation:

Citation: Yang, Chun-Jiun; Chang, Chi-Fon; Huang, Lin-Ya; Chang, Yu-Yung; Shen, Tang-Long; Hsu, Chun-Hua. "Resonance assignments of human C35 (C17orf37) protein, a novel tumor biomarker." Biomol. NMR Assignments 4, 191-193 (2010).
PubMed: 20556552

Assembly members:

Assembly members:
C17orf37, polymer, 117 residues, Formula weight is not available

Natural source:

Natural source: Common Name: Human Taxonomy ID: 9606 Superkingdom: Eukaryota Kingdom: Metazoa Genus/species: Homo sapiens

Experimental source:

Experimental source: Production method: recombinant technology Host organism: Escherichia coli Vector: pET28

Entity Sequences (FASTA):

Entity Sequences (FASTA):
C17orf37: GSMSGEPGQTSVAPPPEEVE PGSGVRIVVEYCEPCGFEAT YLELASAVKEQYPGIEIESR LGGTGAFEIEINGQLVFSKL ENGGFPYEKDLIEAIRRASN GETLEKITNSRPPCVIL

Data sets:

assigned_chemical_shifts
- assigned_chem_shift_list_1

Data type	Count
13C chemical shifts	457
15N chemical shifts	115
1H chemical shifts	741

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	C17orf37	1

Entities:

Entity 1, C17orf37 117 residues - Formula weight is not available

1

GLY

SER

MET

SER

GLY

GLU

PRO

GLY

GLN

THR

2

SER

VAL

ALA

PRO

GLU

VAL

GLU

3

PRO

GLY

SER

GLY

VAL

ARG

ILE

VAL

GLU

4

TYR

CYS

GLU

PRO

CYS

GLY

PHE

GLU

ALA

THR

5

TYR

LEU

GLU

LEU

ALA

SER

ALA

VAL

LYS

GLU

6

GLN

TYR

PRO

GLY

ILE

GLU

ILE

GLU

SER

ARG

7

LEU

GLY

THR

GLY

ALA

PHE

GLU

ILE

GLU

8

ILE

ASN

GLY

GLN

LEU

VAL

PHE

SER

LYS

LEU

9

GLU

ASN

GLY

PHE

PRO

TYR

GLU

LYS

ASP

10

LEU

ILE

GLU

ALA

ILE

ARG

ALA

SER

ASN

11

GLY

GLU

THR

LEU

GLU

LYS

ILE

THR

ASN

SER

12

ARG

PRO

CYS

VAL

ILE

LEU

Samples:

sample_1: C17orf37, [U-13C; U-15N], 0.1 – 0.3 mM; potassium phosphate 20 mM; H2O 90%; D2O 10%

sample_conditions_1: ionic strength: 20 mM; pH: 6.5; pressure: 1 atm; temperature: 310 K

Experiments:

Name	Sample	Sample state	Sample conditions
2D 1H-15N HSQC	sample_1	isotropic	sample_conditions_1
3D CBCA(CO)NH	sample_1	isotropic	sample_conditions_1
3D HNCO	sample_1	isotropic	sample_conditions_1
3D HNCA	sample_1	isotropic	sample_conditions_1
3D HNCACB	sample_1	isotropic	sample_conditions_1
3D HBHA(CO)NH	sample_1	isotropic	sample_conditions_1
3D H(CCO)NH	sample_1	isotropic	sample_conditions_1
3D HCCH-TOCSY	sample_1	isotropic	sample_conditions_1
3D 1H-15N NOESY	sample_1	isotropic	sample_conditions_1
3D 1H-15N TOCSY	sample_1	isotropic	sample_conditions_1
3D HCCH-COSY	sample_1	isotropic	sample_conditions_1
3D HCACO	sample_1	isotropic	sample_conditions_1

Software:

TOPSPIN v2.1pl4, Bruker Biospin - collection, processing

SPARKY v3.114, Goddard - chemical shift assignment, data analysis, peak picking

NMRView v8.0.a30, Johnson, One Moon Scientific - chemical shift assignment, data analysis

NMR spectrometers:

Bruker Avance 600 MHz

PDB	2LJK
DBJ	BAE87852
GB	AAH06006 AAO85461 AAR92035 ADQ33214 AIC52550
REF	NP_001230776 NP_001253733 NP_001270417 NP_115715 XP_002827689
SP	Q9BRT3
AlphaFold	Q9BRT3