BMRB Entry 16337

Chem Shift validation: AVS_anomalous, AVS_full
BMRB Entry DOI: doi:10.13018/BMR16337

NMR-STAR file interactive viewer.
NMR-STAR v3 text file.
XML gzip file.
RDF gzip file.
All files associated with the entry

Title:
Backbone resonance assignments for the aminoglycoside phosphotransferase(3')-IIIa
Deposition date:
2009-06-08
Original release date:
2009-11-18
Authors:
Ozen, Can; Norris, Adrianne; Whittemore, Neil; Steren, Carlos
Citation:

Citation: Serpersu, Engin; Ozen, Can; Norris, Adrianne; Steren, Carlos; Whittemore, Neil. "Backbone resonance assignments of a promiscuous aminoglycoside antibiotic resistance enzyme; the aminoglycoside phosphotransferase(3')-IIIa."  Biomol. NMR Assignments 4, 9-12 (2010).
PubMed: 19898995

Assembly members:

Assembly members:
APH-tobramycin, polymer, 264 residues, 30.974 Da.
TOY, non-polymer, 467.514 Da.

Natural source:

Natural source:   Common Name: Streptococcus faecalis   Taxonomy ID: 1351   Superkingdom: Bacteria   Kingdom: not available   Genus/species: Enterococcus faecalis

Experimental source:

Experimental source:   Production method: recombinant technology   Host organism: Escherichia coli   Vector: pAT21-1

Entity Sequences (FASTA):

Entity Sequences (FASTA):
APH-tobramycin: MAKMRISPELKKLIEKYRCV KDTEGMSPAKVYKLVGENEN LYLKMTDSRYKGTTYDVERE KDMMLWLEGKLPVPKVLHFE RHDGWSNLLMSEADGVLCSE EYEDEQSPEKIIELYAECIR LFHSIDISDCPYTNSLDSRL AELDYLLNNDLADVDCENWE EDTPFKDPRELYDFLKTEKP EEELVFSHGDLGDSNIFVKD GKVSGFIDLGRSGRADKWYD IAFCVRSIREDIGEEQYVEL FFDLLGIKPDWEKIKYYILL DELF

Data sets:
Data typeCount
13C chemical shifts631
15N chemical shifts215
1H chemical shifts217

Additional metadata:

  • Assembly
  • Samples and Experiments
  • Software
  • Spectrometers
  • Hide all

Assembly:

Entity Assembly IDEntity NameEntity ID
1enzyme1
2tobramycin2

Entities:

Entity 1, enzyme 264 residues - 30.974 Da.

1   METALALYSMETARGILESERPROGLULEU
2   LYSLYSLEUILEGLULYSTYRARGCYSVAL
3   LYSASPTHRGLUGLYMETSERPROALALYS
4   VALTYRLYSLEUVALGLYGLUASNGLUASN
5   LEUTYRLEULYSMETTHRASPSERARGTYR
6   LYSGLYTHRTHRTYRASPVALGLUARGGLU
7   LYSASPMETMETLEUTRPLEUGLUGLYLYS
8   LEUPROVALPROLYSVALLEUHISPHEGLU
9   ARGHISASPGLYTRPSERASNLEULEUMET
10   SERGLUALAASPGLYVALLEUCYSSERGLU
11   GLUTYRGLUASPGLUGLNSERPROGLULYS
12   ILEILEGLULEUTYRALAGLUCYSILEARG
13   LEUPHEHISSERILEASPILESERASPCYS
14   PROTYRTHRASNSERLEUASPSERARGLEU
15   ALAGLULEUASPTYRLEULEUASNASNASP
16   LEUALAASPVALASPCYSGLUASNTRPGLU
17   GLUASPTHRPROPHELYSASPPROARGGLU
18   LEUTYRASPPHELEULYSTHRGLULYSPRO
19   GLUGLUGLULEUVALPHESERHISGLYASP
20   LEUGLYASPSERASNILEPHEVALLYSASP
21   GLYLYSVALSERGLYPHEILEASPLEUGLY
22   ARGSERGLYARGALAASPLYSTRPTYRASP
23   ILEALAPHECYSVALARGSERILEARGGLU
24   ASPILEGLYGLUGLUGLNTYRVALGLULEU
25   PHEPHEASPLEULEUGLYILELYSPROASP
26   TRPGLULYSILELYSTYRTYRILELEULEU
27   ASPGLULEUPHE

Entity 2, tobramycin - C18 H37 N5 O9 - 467.514 Da.

1   TOY

Samples:

sample_1: APH-tobramycin, [U-13C; U-15N; U-2H], 250 uM; Tris-HCl 25 mM; sodium chloride 50 mM; DTT 1 mM; H2O 93%; D2O 7%

sample_conditions_1: ionic strength: 50 mM; pH: 7.4; pressure: 1 atm; temperature: 298 K

Experiments:

NameSampleSample stateSample conditions
2D 1H-15N HSQCsample_1isotropicsample_conditions_1
3D HNCAsample_1isotropicsample_conditions_1
3D HN(CO)CAsample_1isotropicsample_conditions_1
3D HNCACBsample_1isotropicsample_conditions_1
3D HNCOsample_1isotropicsample_conditions_1
3D 1H-15N NOESYsample_1isotropicsample_conditions_1

Software:

NMRView v5, Johnson, One Moon Scientific - data analysis

NMR spectrometers:

  • Varian DMX 600 MHz
  • Varian DMX 900 MHz

Related Database Links:

PDB
DBJ BAE98117 BAF75368 BAF75370 BAF82029 BAG12997
EMBL CAA04791 CAA24789 CAA67773 CAA85747 CAC29201
GB AAA26596 AAA98050 AAA98979 AAB07765 AAC16050
PIR I40613
PRF 1202264A
REF WP_001096887 WP_001637127 WP_002360696 WP_002409341 WP_002418579
SP P0A3Y5 P0A3Y6
AlphaFold P0A3Y5 P0A3Y6

Download HSQC peak lists in one of the following formats:
CSV: Backbone or all simulated peaks
SPARKY: Backbone or all simulated peaks