BMRB Entry 16274

Name: SLBP PAPA peptide
Published: 2012-08-06

Chem Shift validation: AVS_full
BMRB Entry DOI: doi:10.13018/BMR16274

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Nicholas Rego and David Koes
3Dmol.js: molecular visualization with WebGL
Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title:

SLBP PAPA peptide

Deposition date:

2009-05-04

Original release date:

2012-08-06

Authors:

Thapar, Roopa

Citation:

Citation: Krishnan, Nithya; Lam, Tukiet; Fritz, Andrew; Rempinski, Donald; Minderman, Kieran; Berezney, Hans; Marzluff, Ronald; Thapar, William. "The prolyl isomerase Pin1 targets stem-loop binding protein (SLBP) to dissociate the SLBP-histone mRNA complex linking histone mRNA decay with SLBP ubiquitination." Mol. Cell. Biol. 32, 4306-4322 (2012).
PubMed: 22907757

Assembly members:

Assembly members:
SLBP, polymer, 21 residues, Formula weight is not available

Natural source:

Natural source: Common Name: Human Taxonomy ID: 9606 Superkingdom: Eukaryota Kingdom: Metazoa Genus/species: Homo sapiens

Experimental source:

Experimental source: Production method: chemical synthesis

Entity Sequences (FASTA):

Entity Sequences (FASTA):
SLBP: HLRQPGIHAAKTANKFKKYS R

Data sets:

assigned_chemical_shifts
- assigned_chem_shift_list_1

Data type	Count
15N chemical shifts	17
1H chemical shifts	110

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	SLBP	1

Entities:

Entity 1, SLBP 21 residues - Formula weight is not available

Phosphorylation site in the RNA binding domain of SLBP that exhibits phosphorylation-dependent prolyl isomerization

1

HIS

LEU

ARG

GLN

PRO

GLY

ILE

HIS

ALA

2

LYS

THR

ALA

ASN

LYS

PHE

LYS

TYR

SER

3

ARG

Samples:

sample_1: SLBP PAPA peptide 5 mM; H2O 90%; D2O 10%; Tris acetate 20 mM; NaCl 50 mM

sample_conditions_1: ionic strength: 50 mM; pH: 5; pressure: 1 atm; temperature: 278 K

Experiments:

Name	Sample	Sample state	Sample conditions
2D 1H-1H TOCSY	sample_1	isotropic	sample_conditions_1
2D DQF-COSY	sample_1	isotropic	sample_conditions_1
2D 1H-1H NOESY	sample_1	isotropic	sample_conditions_1
2D 1H-15N HSQC	sample_1	isotropic	sample_conditions_1

Software:

FELIX, Accelrys Software Inc. - chemical shift assignment

NMR spectrometers:

Varian INOVA 700 MHz
Varian INOVA 600 MHz