BMRB Entry 16234

Name: Relaxation data of the N-terminal domain of capsid protein from the Mason-Pfizer monkey virus
Published: 2009-06-17

Chem Shift validation: AVS_full
BMRB Entry DOI: doi:10.13018/BMR16234

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Nicholas Rego and David Koes
3Dmol.js: molecular visualization with WebGL
Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title:

Relaxation data of the N-terminal domain of capsid protein from the Mason-Pfizer monkey virus

Deposition date:

2009-03-31

Original release date:

2009-06-17

Authors:

Macek, Pavel; Kaderavek, Pavel; Zidek, Lukas; Sklenar, Vladimir; Macek, Pavel

Citation:

Citation: Macek, Pavel; Chmelik, Josef; Krizova, Ivana; Kaderavek, Pavel; Padrta, Petr; Zidek, Lukas; Wildova, Marcela; Hadravova, Romana; Chaloupkova, Radka; Pichova, Iva; Ruml, Tomas; Rumlova, Michaela; Sklenar, Vladimir. "NMR structure of the N-terminal domain of capsid protein from the Mason-Pfizer monkey virus" J. Mol. Biol. 392, 100-114 (2009).
PubMed: 19527730

Assembly members:

Assembly members:
MPMV_NTD_CA, polymer, 140 residues, Formula weight is not available

Natural source:

Natural source: Common Name: Mason-Pfizer Monkey Virus Taxonomy ID: 11855 Superkingdom: Viruses Kingdom: not available Genus/species: Betaretrovirus Mason-Pfizer monkey virus

Experimental source:

Experimental source: Production method: recombinant technology Host organism: Escherichia coli Vector: pET22b

Entity Sequences (FASTA):

Entity Sequences (FASTA):
MPMV_NTD_CA: PVTETVDGQGQAWRHHNGFD FAVIKELKTAASQYGATAPY TLAIVESVADNWLTPTDWNT LVRAVLSGGDHLLWKSEFFE NCRDTAKRNQQAGNGWDFDM LTGSGNYSSTDAQMQYDPGL FAQIQAAATKAWRKLPVKGD

Data sets:

heteronucl_NOEs
- heteronuclear_noe_list_1
heteronucl_T1_relaxation
- heteronuclear_T1_list_1
heteronucl_T2_relaxation
- heteronuclear_T2_list_1

Data type	Count
heteronuclear NOE values	111
T1 relaxation values	111
T2 relaxation values	111

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	MPMV NTD CA	1

Entities:

Entity 1, MPMV NTD CA 140 residues - Formula weight is not available

1	PRO	VAL	THR	GLU	THR	VAL	ASP	GLY	GLN	GLY
2	GLN	ALA	TRP	ARG	HIS	HIS	ASN	GLY	PHE	ASP
3	PHE	ALA	VAL	ILE	LYS	GLU	LEU	LYS	THR	ALA
4	ALA	SER	GLN	TYR	GLY	ALA	THR	ALA	PRO	TYR
5	THR	LEU	ALA	ILE	VAL	GLU	SER	VAL	ALA	ASP
6	ASN	TRP	LEU	THR	PRO	THR	ASP	TRP	ASN	THR
7	LEU	VAL	ARG	ALA	VAL	LEU	SER	GLY	GLY	ASP
8	HIS	LEU	LEU	TRP	LYS	SER	GLU	PHE	PHE	GLU
9	ASN	CYS	ARG	ASP	THR	ALA	LYS	ARG	ASN	GLN
10	GLN	ALA	GLY	ASN	GLY	TRP	ASP	PHE	ASP	MET
11	LEU	THR	GLY	SER	GLY	ASN	TYR	SER	SER	THR
12	ASP	ALA	GLN	MET	GLN	TYR	ASP	PRO	GLY	LEU
13	PHE	ALA	GLN	ILE	GLN	ALA	ALA	ALA	THR	LYS
14	ALA	TRP	ARG	LYS	LEU	PRO	VAL	LYS	GLY	ASP

Samples:

sample_1: MPMV NTD CA, [U-100% 15N], 0.7 – 1.0 mM; sodium chloride 150 mM

sample_conditions_1: ionic strength: 0.15 M; pH: 8.0; pressure: 1 atm; temperature: 298 K

Experiments:

Name	Sample	Sample state	Sample conditions
2D 1H-15N HSQC	sample_1	isotropic	sample_conditions_1

Software:

Relax, d'Auvergne, Gooley - relaxation analysis

NMR spectrometers:

Bruker Avance 600 MHz

BMRB	15581
PDB	2KGF 4ARD
DBJ	BAD89356 BAQ21760 BAQ21764
GB	AAA47710 AAA47730 AAC82573 AAC82574 AAC82576
PIR	FOLJSA
REF	NP_056891 NP_056892 NP_056893 NP_954560 NP_954565
SP	P04022 P07567
AlphaFold	P04022 P07567

1	PRO	VAL	THR	GLU	THR	VAL	ASP	GLY	GLN	GLY
2	GLN	ALA	TRP	ARG	HIS	HIS	ASN	GLY	PHE	ASP
3	PHE	ALA	VAL	ILE	LYS	GLU	LEU	LYS	THR	ALA
4	ALA	SER	GLN	TYR	GLY	ALA	THR	ALA	PRO	TYR
5	THR	LEU	ALA	ILE	VAL	GLU	SER	VAL	ALA	ASP
6	ASN	TRP	LEU	THR	PRO	THR	ASP	TRP	ASN	THR
7	LEU	VAL	ARG	ALA	VAL	LEU	SER	GLY	GLY	ASP
8	HIS	LEU	LEU	TRP	LYS	SER	GLU	PHE	PHE	GLU
9	ASN	CYS	ARG	ASP	THR	ALA	LYS	ARG	ASN	GLN
10	GLN	ALA	GLY	ASN	GLY	TRP	ASP	PHE	ASP	MET
11	LEU	THR	GLY	SER	GLY	ASN	TYR	SER	SER	THR
12	ASP	ALA	GLN	MET	GLN	TYR	ASP	PRO	GLY	LEU
13	PHE	ALA	GLN	ILE	GLN	ALA	ALA	ALA	THR	LYS
14	ALA	TRP	ARG	LYS	LEU	PRO	VAL	LYS	GLY	ASP

1	PRO	VAL	THR	GLU	THR	VAL	ASP	GLY	GLN	GLY
2	GLN	ALA	TRP	ARG	HIS	HIS	ASN	GLY	PHE	ASP
3	PHE	ALA	VAL	ILE	LYS	GLU	LEU	LYS	THR	ALA
4	ALA	SER	GLN	TYR	GLY	ALA	THR	ALA	PRO	TYR
5	THR	LEU	ALA	ILE	VAL	GLU	SER	VAL	ALA	ASP
6	ASN	TRP	LEU	THR	PRO	THR	ASP	TRP	ASN	THR
7	LEU	VAL	ARG	ALA	VAL	LEU	SER	GLY	GLY	ASP
8	HIS	LEU	LEU	TRP	LYS	SER	GLU	PHE	PHE	GLU
9	ASN	CYS	ARG	ASP	THR	ALA	LYS	ARG	ASN	GLN
10	GLN	ALA	GLY	ASN	GLY	TRP	ASP	PHE	ASP	MET
11	LEU	THR	GLY	SER	GLY	ASN	TYR	SER	SER	THR
12	ASP	ALA	GLN	MET	GLN	TYR	ASP	PRO	GLY	LEU
13	PHE	ALA	GLN	ILE	GLN	ALA	ALA	ALA	THR	LYS
14	ALA	TRP	ARG	LYS	LEU	PRO	VAL	LYS	GLY	ASP