BMRB Entry 16073

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PDB ID:
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_full, SPARTA
BMRB Entry DOI: doi:10.13018/BMR16073
MolProbity Validation Chart

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Title:
Solution structure of cycloviolacin O2
Deposition date:
2008-12-21
Original release date:
2009-09-04
Authors:
Wang, Conan
Citation:

Citation: Wang, Conan; Colgrave, Michelle; Ireland, David; Kaas, Quentin; Craik, David. "Despite a conserved cystine knot motif, different cyclotides have different membrane binding modes"  Biophys. J. 97, 1471-1481 (2009).
PubMed: 19720036

Assembly members:

Assembly members:
cycloviolacin O2, polymer, 30 residues, Formula weight is not available

Natural source:

Natural source:   Common Name: Viola odorata   Taxonomy ID: 97441   Superkingdom: Eukaryota   Kingdom: Viridiplantae   Genus/species: Viola odorata

Experimental source:

Experimental source:   Production method: purified from the natural source

Entity Sequences (FASTA):

Entity Sequences (FASTA):
cycloviolacin O2: GIPCGESCVWIPCISSAIGC SCKSKVCYRN

Data sets:
Data typeCount
1H chemical shifts181

Additional metadata:

  • Assembly
  • Samples and Experiments
  • Software
  • Spectrometers
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Assembly:

Entity Assembly IDEntity NameEntity ID
1cycloviolacin O21

Entities:

Entity 1, cycloviolacin O2 30 residues - Formula weight is not available

1   GLYILEPROCYSGLYGLUSERCYSVALTRP
2   ILEPROCYSILESERSERALAILEGLYCYS
3   SERCYSLYSSERLYSVALCYSTYRARGASN

Samples:

sample_1: entity 2 mM; H2O 90%; D2O 10%

sample_conditions_1: pH: 5; pressure: 1 atm; temperature: 303 K

Experiments:

NameSampleSample stateSample conditions
2D 1H-1H NOESYsample_1isotropicsample_conditions_1

Software:

CNS, Brunger A. T. et.al. - refinement

NMR spectrometers:

  • Bruker DMX 750 MHz

Related Database Links:

PDB
GB AGI97139 AGI97141
SP P58434 P85526
AlphaFold P58434 P85526