BMRB Entry 16072

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PDB ID: 2kcd
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_anomalous, AVS_full, LACS, SPARTA
BMRB Entry DOI: doi:10.13018/BMR16072
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Nicholas Rego and David Koes
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Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title:

Solution NMR structure of SSP0047 from Staphylococcus saprophyticus. Northeast Structural Genomics Consortium Target SyR6.

Deposition date:

2008-12-19

Original release date:

2009-02-17

Authors:

Ramelot, Theresa; Ding, Keyang; Chen, Chen; Jiang, Mei; Ciccosanti, Colleen; Xiao, Rong; Liu, Jinfeng; Baran, Michael; Swapna, G.V.T.; Acton, Thomas; Rost, Burkhard; Montelione, Gaetano; Kennedy, Michael

Citation:

Citation: Ramelot, Theresa; Ding, Keyang; Chen, Chen; Jiang, Mei; Ciccosanti, Colleen; Xiao, Rong; Liu, Jinfeng; Baran, Michael; Swapna, G.V.T.; Acton, Thomas; Rost, Burkhard; Montelione, Gaetano; Kennedy, Michael. "Solution NMR structure of SSP0047 from Staphylococcus saprophyticus. Northeast Structural Genomics Consortium Target SyR6." .

Assembly members:

Assembly members:
SSP0047, polymer, 120 residues, 13320 Da.

Natural source:

Natural source: Common Name: Staphylococcus saprophyticus Taxonomy ID: 29385 Superkingdom: Bacteria Kingdom: not available Genus/species: Staphylococcus saprophyticus

Experimental source:

Experimental source: Production method: recombinant technology Host organism: Escherichia coli Vector: pET21

Entity Sequences (FASTA):

Entity Sequences (FASTA):
SSP0047: MTLELQLKHYITNLFNLPRD EKWECESIEEVADDILPDQY VRLGPLSNKILQTNTYYSDT LHKSNIYPFILYYQKQLIAI GFIDENHDMDFLYLHNTVMP LLDQRYLLTGGQLEHHHHHH

Data sets:

assigned_chemical_shifts
- assigned_chem_shift_list_1

Data type	Count
13C chemical shifts	547
15N chemical shifts	120
1H chemical shifts	858

Time Domain Data

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	SSP0047	1

Entities:

Entity 1, SSP0047 120 residues - 13320 Da.

1	MET	THR	LEU	GLU	LEU	GLN	LEU	LYS	HIS	TYR
2	ILE	THR	ASN	LEU	PHE	ASN	LEU	PRO	ARG	ASP
3	GLU	LYS	TRP	GLU	CYS	GLU	SER	ILE	GLU	GLU
4	VAL	ALA	ASP	ASP	ILE	LEU	PRO	ASP	GLN	TYR
5	VAL	ARG	LEU	GLY	PRO	LEU	SER	ASN	LYS	ILE
6	LEU	GLN	THR	ASN	THR	TYR	TYR	SER	ASP	THR
7	LEU	HIS	LYS	SER	ASN	ILE	TYR	PRO	PHE	ILE
8	LEU	TYR	TYR	GLN	LYS	GLN	LEU	ILE	ALA	ILE
9	GLY	PHE	ILE	ASP	GLU	ASN	HIS	ASP	MET	ASP
10	PHE	LEU	TYR	LEU	HIS	ASN	THR	VAL	MET	PRO
11	LEU	LEU	ASP	GLN	ARG	TYR	LEU	LEU	THR	GLY
12	GLY	GLN	LEU	GLU	HIS	HIS	HIS	HIS	HIS	HIS

Name	Sample	Sample state	Sample conditions
2D 1H-15N HSQC	NC_sample	isotropic	sample_conditions_1
2D 1H-13C HSQC	NC_sample	isotropic	sample_conditions_1
3D 1H-15N NOESY	NC_sample	isotropic	sample_conditions_1
3D 1H-13C NOESY	NC_sample	isotropic	sample_conditions_1
4D 1H-13C NOESY	NC_sample_in_D2O	isotropic	sample_conditions_1
3D HNCO	NC_sample	isotropic	sample_conditions_1
3D 1H-13C NOESY	NC_sample_in_D2O	isotropic	sample_conditions_1
3D HNCA	NC_sample	isotropic	sample_conditions_1
3D HN(CO)CA	NC_sample	isotropic	sample_conditions_1
3D CBCA(CO)NH	NC_sample	isotropic	sample_conditions_1
3D HNCACB	NC_sample	isotropic	sample_conditions_1
3D C(CO)NH	NC_sample	isotropic	sample_conditions_1
3D HBHA(CO)NH	NC_sample	isotropic	sample_conditions_1
3D HCCH-TOCSY	NC_sample	isotropic	sample_conditions_1
3D HCCH-COSY	NC_sample	isotropic	sample_conditions_1
2D 1H-15N HSQC	NC_sample_in_D2O	isotropic	sample_conditions_1
2D 1H-13C HSQC	NC_sample_in_D2O	isotropic	sample_conditions_1
2D 1H-13C HSQC	NC5_sample	isotropic	sample_conditions_1
3D CBCACOCAHA	NC_sample_in_D2O	isotropic	sample_conditions_1

SWS	Q4A134_STAS1
UNP	Q4A134
PDB	2KCD
DBJ	BAE17192
REF	WP_011302049 WP_053041968
AlphaFold	Q4A134

BMRB Entry 16072

Additional metadata:

Assembly:

Entities:

Samples:

Experiments:

Software:

NMR spectrometers:

Related Database Links:

1	MET	THR	LEU	GLU	LEU	GLN	LEU	LYS	HIS	TYR
2	ILE	THR	ASN	LEU	PHE	ASN	LEU	PRO	ARG	ASP
3	GLU	LYS	TRP	GLU	CYS	GLU	SER	ILE	GLU	GLU
4	VAL	ALA	ASP	ASP	ILE	LEU	PRO	ASP	GLN	TYR
5	VAL	ARG	LEU	GLY	PRO	LEU	SER	ASN	LYS	ILE
6	LEU	GLN	THR	ASN	THR	TYR	TYR	SER	ASP	THR
7	LEU	HIS	LYS	SER	ASN	ILE	TYR	PRO	PHE	ILE
8	LEU	TYR	TYR	GLN	LYS	GLN	LEU	ILE	ALA	ILE
9	GLY	PHE	ILE	ASP	GLU	ASN	HIS	ASP	MET	ASP
10	PHE	LEU	TYR	LEU	HIS	ASN	THR	VAL	MET	PRO
11	LEU	LEU	ASP	GLN	ARG	TYR	LEU	LEU	THR	GLY
12	GLY	GLN	LEU	GLU	HIS	HIS	HIS	HIS	HIS	HIS

1	MET	THR	LEU	GLU	LEU	GLN	LEU	LYS	HIS	TYR
2	ILE	THR	ASN	LEU	PHE	ASN	LEU	PRO	ARG	ASP
3	GLU	LYS	TRP	GLU	CYS	GLU	SER	ILE	GLU	GLU
4	VAL	ALA	ASP	ASP	ILE	LEU	PRO	ASP	GLN	TYR
5	VAL	ARG	LEU	GLY	PRO	LEU	SER	ASN	LYS	ILE
6	LEU	GLN	THR	ASN	THR	TYR	TYR	SER	ASP	THR
7	LEU	HIS	LYS	SER	ASN	ILE	TYR	PRO	PHE	ILE
8	LEU	TYR	TYR	GLN	LYS	GLN	LEU	ILE	ALA	ILE
9	GLY	PHE	ILE	ASP	GLU	ASN	HIS	ASP	MET	ASP
10	PHE	LEU	TYR	LEU	HIS	ASN	THR	VAL	MET	PRO
11	LEU	LEU	ASP	GLN	ARG	TYR	LEU	LEU	THR	GLY
12	GLY	GLN	LEU	GLU	HIS	HIS	HIS	HIS	HIS	HIS

1	MET	THR	LEU	GLU	LEU	GLN	LEU	LYS	HIS	TYR
2	ILE	THR	ASN	LEU	PHE	ASN	LEU	PRO	ARG	ASP
3	GLU	LYS	TRP	GLU	CYS	GLU	SER	ILE	GLU	GLU
4	VAL	ALA	ASP	ASP	ILE	LEU	PRO	ASP	GLN	TYR
5	VAL	ARG	LEU	GLY	PRO	LEU	SER	ASN	LYS	ILE
6	LEU	GLN	THR	ASN	THR	TYR	TYR	SER	ASP	THR
7	LEU	HIS	LYS	SER	ASN	ILE	TYR	PRO	PHE	ILE
8	LEU	TYR	TYR	GLN	LYS	GLN	LEU	ILE	ALA	ILE
9	GLY	PHE	ILE	ASP	GLU	ASN	HIS	ASP	MET	ASP
10	PHE	LEU	TYR	LEU	HIS	ASN	THR	VAL	MET	PRO
11	LEU	LEU	ASP	GLN	ARG	TYR	LEU	LEU	THR	GLY
12	GLY	GLN	LEU	GLU	HIS	HIS	HIS	HIS	HIS	HIS