BMRB Entry 15840

Chem Shift validation: AVS_full, LACS
BMRB Entry DOI: doi:10.13018/BMR15840

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Title:
Chemical Shift assignment of RhR2 from Rodobacter Sphaeroides, North east Structural Genomics Consortium Target SeR13
Deposition date:
2008-06-28
Original release date:
2008-07-24
Authors:
Lee, Hsiau-Wei; Bansal, Sonal; Chen, Chen; Jiang, Mei; Maglaqui, Melissa; Xiao, Rong; Liu, Jinfeng; Baran, Michael; Swapna, G.V.T.; Acton, Thomas; Rost, Burkhard; Montelione, Gaetano; Prestegard, James
Citation:

Citation: Lee, Hsiau-Wei; Bansal, Sonal; Montelione, Gaetano; Prestegard, James. "Solution Structure of RhR2"  .

Assembly members:

Assembly members:
RhR2, polymer, 70 residues, 7148.213 Da.

Natural source:

Natural source:   Common Name: Rhodobacter sphaeroides   Taxonomy ID: 1063   Superkingdom: Bacteria   Kingdom: not available   Genus/species: Rhodobacter sphaeroides

Experimental source:

Experimental source:   Production method: recombinant technology   Host organism: Escherichia coli   Vector: pET21

Entity Sequences (FASTA):

Entity Sequences (FASTA):
RhR2: MRDMTEETRKDLPPEALRAL AEAEERRRRAKALDLPKEIG GRNGPEPVRFGDWEKKGIAI DFLEHHHHHH

Data sets:
Data typeCount
13C chemical shifts215
15N chemical shifts53
1H chemical shifts308
residual dipolar couplings19

Additional metadata:

  • Assembly
  • Samples and Experiments
  • Software
  • Spectrometers
  • Hide all

Assembly:

Entity Assembly IDEntity NameEntity ID
1RhR21

Entities:

Entity 1, RhR2 70 residues - 7148.213 Da.

LEHHHHHH are at the C-terminal as part of His-Tag

1   METARGASPMETTHRGLUGLUTHRARGLYS
2   ASPLEUPROPROGLUALALEUARGALALEU
3   ALAGLUALAGLUGLUARGARGARGARGALA
4   LYSALALEUASPLEUPROLYSGLUILEGLY
5   GLYARGASNGLYPROGLUPROVALARGPHE
6   GLYASPTRPGLULYSLYSGLYILEALAILE
7   ASPPHELEUGLUHISHISHISHISHISHIS

Samples:

sample_1: RhR2, [U-100% 13C; U-100% 15N], 0.87 mM; sodium azide 0.2%; DTT 100 mM; CaCl2 5 mM; sodium chloride 100 mM; MES 20 mM; H2O 95%; D2O, [U-100% 2H], 5%

sample_2: RhR2, [U-100% 13C; U-100% 15N], 0.74 mM; sodium azide 0.2%; DTT 100 mM; CaCl2 5 mM; sodium chloride 100 mM; MES 20 mM; Pentaethylene glycol monodecyl ether 8%; H2O 95%; D2O, [U-100% 2H], 5%

sample_conditions_1: ionic strength: 100 mM; pH: 6.5; pressure: 1 atm; temperature: 298 K

Experiments:

NameSampleSample stateSample conditions
2D 1H-15N HSQCsample_1isotropicsample_conditions_1
3D CBCA(CO)NHsample_1isotropicsample_conditions_1
3D C(CO)NHsample_1isotropicsample_conditions_1
3D HNCOsample_1isotropicsample_conditions_1
3D HNCACBsample_1isotropicsample_conditions_1
3D H(CCO)NHsample_1isotropicsample_conditions_1
3D HCCH-TOCSYsample_1isotropicsample_conditions_1
3D 1H-15N NOESYsample_1isotropicsample_conditions_1
3D 1H-15N TOCSYsample_1isotropicsample_conditions_1
3D 1H-13C NOESYsample_1isotropicsample_conditions_1
2D 1H-15N HSQCTROSYsample_2anisotropicsample_conditions_1

Software:

CYANA v2.1, Guntert, Mumenthaler and Wuthrich - structure solution

X-PLOR NIH, Schwieters, Kuszewski, Tjandra and Clore - refinement

SPARKY, Goddard - chemical shift assignment

TALOS, Cornilescu, Delaglio and Bax - data analysis

NMRPipe, Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax - processing

PSVS, Bhattacharya and Montelione - data analysis

NMR spectrometers:

  • Varian INOVA 600 MHz

Related Database Links:

PDB
GB ABA80289 ABN77868 EGJ22606 EKX58174
REF WP_009563153 WP_011338719 WP_043764254 YP_354190

Download HSQC peak lists in one of the following formats:
CSV: Backbone or all simulated peaks
SPARKY: Backbone or all simulated peaks