BMRB Entry 15739

Name: Hydramacin-1: Structure and antibacterial activity of a peptide from the basal metazoan Hydra
Published: 2008-11-25

Chem Shift validation: LACS, SPARTA
BMRB Entry DOI: doi:10.13018/BMR15739

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Nicholas Rego and David Koes
3Dmol.js: molecular visualization with WebGL
Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title:

Hydramacin-1: Structure and antibacterial activity of a peptide from the basal metazoan Hydra

Deposition date:

2008-04-22

Original release date:

2008-11-25

Authors:

Jung, Sascha; Dingley, Andrew; Stanisak, Mareike; Gelhaus, Christoph; Bosch, Thomas; Podschun, Rainer; Leippe, Matthias; Groetzinger, Joachim

Citation:

Citation: Jung, Sascha; Dingley, Andrew; Augustin, Rene; Anton-Erxleben, Frederike; Stanisak, Mareike; Gelhaus, Christoph; Gutsmann, Thomas; Hammer, Malte; Podschun, Rainer; Bonvin, Alexandre; Leippe, Matthias; Bosch, Thomas; Groetzinger, Joachim. "Hydramacin-1: Structure and antibacterial activity of a protein from the basal metazoan hydra" J. Biol. Chem. 284, 1896-1905 (2009).
PubMed: 19019828

Assembly members:

Assembly members:
hydramacin-1, polymer, 60 residues, Formula weight is not available

Natural source:

Natural source: Common Name: Hydra Taxonomy ID: 6083 Superkingdom: Eukaryota Kingdom: Metazoa Genus/species: Hydra not available

Experimental source:

Experimental source: Production method: recombinant technology Host organism: Escherichia coli Vector: pET32a

Entity Sequences (FASTA):

Entity Sequences (FASTA):
hydramacin-1: QIVDCWETWSRCTKWSQGGT GTLWKSCNDRCKELGRKRGQ CEEKPSRCPLSKKAWTCICY

Data sets:

assigned_chemical_shifts
- assignments_sequence
spectral_peak_list
- spectral_peak_list_20080108_list_15N_noe_final2
- spectral_peak_list_20080108_list_15N_noe_final2

Data type	Count
13C chemical shifts	172
15N chemical shifts	62
1H chemical shifts	340

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	hydramacin-1	1

Entities:

Entity 1, hydramacin-1 60 residues - Formula weight is not available

1	GLN	ILE	VAL	ASP	CYS	TRP	GLU	THR	TRP	SER
2	ARG	CYS	THR	LYS	TRP	SER	GLN	GLY	GLY	THR
3	GLY	THR	LEU	TRP	LYS	SER	CYS	ASN	ASP	ARG
4	CYS	LYS	GLU	LEU	GLY	ARG	LYS	ARG	GLY	GLN
5	CYS	GLU	GLU	LYS	PRO	SER	ARG	CYS	PRO	LEU
6	SER	LYS	LYS	ALA	TRP	THR	CYS	ILE	CYS	TYR

Samples:

sample_1: hydramacin-1, [U-100% 13C; U-100% 15N], 1.0 mM; D2O 7%; H2O 93%

sample_conditions_1: ionic strength: 0.050 M; pH: 5.7; pressure: 1 atm; temperature: 298 K

Experiments:

Name	Sample	Sample state	Sample conditions
3D HNCA	sample_1	isotropic	sample_conditions_1
3D HNCO	sample_1	isotropic	sample_conditions_1
3D H(CCO)NH	sample_1	isotropic	sample_conditions_1
3D C(CO)NH	sample_1	isotropic	sample_conditions_1
3D HCACO	sample_1	isotropic	sample_conditions_1
3D CBCA(CO)NH	sample_1	isotropic	sample_conditions_1
3D HNCACB	sample_1	isotropic	sample_conditions_1
3D 1H-15N NOESY	sample_1	isotropic	sample_conditions_1
3D 1H-15N TOCSY	sample_1	isotropic	sample_conditions_1
3D 1H-13C NOESY	sample_1	isotropic	sample_conditions_1
3D HCCH-TOCSY	sample_1	isotropic	sample_conditions_1

Software:

NMRView, Johnson, One Moon Scientific - chemical shift assignment

NMR spectrometers:

Bruker DRX 600 MHz

PDB	2K35
GB	ABE26989
SP	B3RFR8
AlphaFold	B3RFR8

1	GLN	ILE	VAL	ASP	CYS	TRP	GLU	THR	TRP	SER
2	ARG	CYS	THR	LYS	TRP	SER	GLN	GLY	GLY	THR
3	GLY	THR	LEU	TRP	LYS	SER	CYS	ASN	ASP	ARG
4	CYS	LYS	GLU	LEU	GLY	ARG	LYS	ARG	GLY	GLN
5	CYS	GLU	GLU	LYS	PRO	SER	ARG	CYS	PRO	LEU
6	SER	LYS	LYS	ALA	TRP	THR	CYS	ILE	CYS	TYR

1	GLN	ILE	VAL	ASP	CYS	TRP	GLU	THR	TRP	SER
2	ARG	CYS	THR	LYS	TRP	SER	GLN	GLY	GLY	THR
3	GLY	THR	LEU	TRP	LYS	SER	CYS	ASN	ASP	ARG
4	CYS	LYS	GLU	LEU	GLY	ARG	LYS	ARG	GLY	GLN
5	CYS	GLU	GLU	LYS	PRO	SER	ARG	CYS	PRO	LEU
6	SER	LYS	LYS	ALA	TRP	THR	CYS	ILE	CYS	TYR