BMRB Entry 15530

Chem Shift validation: AVS_anomalous, AVS_full, LACS
BMRB Entry DOI: doi:10.13018/BMR15530

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Title:
Solution structure of Mj0056
Deposition date:
2007-10-18
Original release date:
2008-06-27
Authors:
Coles, M.; Truffault, V.; Djuranovic, S.; Martin, J.; Lupas, A.
Citation:

Citation: Ammelburg, M.; Hartmann, M.; Djuranovic, S.; Alva, V.; Koretke, K.; Martin, J.; Sauer, G.; Truffault, V.; Zeth, K.; Lupas, A.; Coles, M.. "A CTP-dependent archaeal riboflavin kinase forms a bridge in the evolution of cradle-loop barrels"  Structure 15, 1577-1590 (2007).
PubMed: 18073108

Assembly members:

Assembly members:
Riboflavin_Kinase_MJ0056, polymer, 136 residues, Formula weight is not available

Natural source:

Natural source:   Common Name: Methanococcus jannaschii   Taxonomy ID: 2190   Superkingdom: Archaea   Kingdom: not available   Genus/species: Methanococcus jannaschii

Experimental source:

Experimental source:   Production method: recombinant technology   Host organism: Escherichia coli   Vector: pET30b

Entity Sequences (FASTA):

Entity Sequences (FASTA):
Riboflavin_Kinase_MJ0056: MVKLMIIEGEVVSGLGEGRY FLSLPPYKEIFKKILGFEPY EGTLNLKLDREFDINKFKYI ETEDFEFNGKRFFGVKVLPI KILIGNKKIDGAIVVPKKTY HSSEIIEIIAPMKLREQFNL KDGDVIKILIKGDKDE

Data sets:
Data typeCount
13C chemical shifts552
15N chemical shifts113
1H chemical shifts992

Additional metadata:

  • Assembly
  • Samples and Experiments
  • Software
  • Spectrometers
  • Hide all

Assembly:

Entity Assembly IDEntity NameEntity ID
1Riboflavin Kinase MJ00561

Entities:

Entity 1, Riboflavin Kinase MJ0056 136 residues - Formula weight is not available

1   METVALLYSLEUMETILEILEGLUGLYGLU
2   VALVALSERGLYLEUGLYGLUGLYARGTYR
3   PHELEUSERLEUPROPROTYRLYSGLUILE
4   PHELYSLYSILELEUGLYPHEGLUPROTYR
5   GLUGLYTHRLEUASNLEULYSLEUASPARG
6   GLUPHEASPILEASNLYSPHELYSTYRILE
7   GLUTHRGLUASPPHEGLUPHEASNGLYLYS
8   ARGPHEPHEGLYVALLYSVALLEUPROILE
9   LYSILELEUILEGLYASNLYSLYSILEASP
10   GLYALAILEVALVALPROLYSLYSTHRTYR
11   HISSERSERGLUILEILEGLUILEILEALA
12   PROMETLYSLEUARGGLUGLNPHEASNLEU
13   LYSASPGLYASPVALILELYSILELEUILE
14   LYSGLYASPLYSASPGLU

Samples:

sample_1: Riboflavin Kinase MJ0056 0.65 mM; sodium phosphate 30 mM; sodium chloride 150 mM; H2O 90%; D2O 10%

sample_2: Riboflavin Kinase MJ0056, [U-100% 15N], 0.65 mM; sodium phosphate 30 mM; sodium chloride 150 mM; H2O 90%; D2O 10%

sample_3: Riboflavin Kinase MJ0056, [U-100% 13C; U-100% 15N], 0.65 mM; sodium phosphate 30 mM; sodium chloride 150 mM; H2O 90%; D2O 10%

sample_conditions_1: ionic strength: 150 mM; pH: 7.4; pressure: 1 atm; temperature: 300 K

Experiments:

NameSampleSample stateSample conditions
2D NOESYsample_1isotropicsample_conditions_1
3D_15N-SEPARATED_ NOESYsample_2isotropicsample_conditions_1
3D_NNH_NOESYsample_2isotropicsample_conditions_1
HNHAsample_2isotropicsample_conditions_1
HNHBsample_2isotropicsample_conditions_1
3D_13C-SEPARATED_NOESYsample_3isotropicsample_conditions_1
3D_CNH_NOESYsample_3isotropicsample_conditions_1
3D HNCACBsample_3isotropicsample_conditions_1
3D HNCOsample_3isotropicsample_conditions_1
3D HCCH-TOCSYsample_3isotropicsample_conditions_1
3D CCH-COSYsample_3isotropicsample_conditions_1

Software:

X-PLOR NIH v2.9.4, Brunger - refinement, structure solution

xwinnmr v3.1, Bruker Biospin - collection, processing

SPARKY, Goddard - data analysis

NMR spectrometers:

  • BRUKER DMX 600 MHz
  • BRUKER AVANCE 750 MHz
  • BRUKER AVANCE 900 MHz

Related Database Links:

SWS Q60365
PDB
GB AAB98036
SP Q60365
AlphaFold Q60365

Download HSQC peak lists in one of the following formats:
CSV: Backbone or all simulated peaks
SPARKY: Backbone or all simulated peaks