BMRB Entry 15477

Name: Solution structure of the extracellular domain of Prod1, a protein implicated in proximodistal identity during amphibian limb regeneration
Published: 2009-10-14

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PDB ID: 2jve
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_full, LACS, SPARTA
BMRB Entry DOI: doi:10.13018/BMR15477
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Nicholas Rego and David Koes
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Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title:

Solution structure of the extracellular domain of Prod1, a protein implicated in proximodistal identity during amphibian limb regeneration

Deposition date:

2007-09-19

Original release date:

2009-10-14

Authors:

Garza-Garcia, Acely; Harris, Richard; Esposito, Diego; Driscoll, Paul

Citation:

Citation: Garza-Garcia, Acely; Harris, Richard; Esposito, Diego; Gates, Phillip; Driscoll, Paul. "Solution structure and phylogenetics of Prod1, a member of the three-finger protein superfamily implicated in salamander limb regeneration." PLoS One 4, 7123-. (2009).
PubMed: 19771161

Assembly members:

Assembly members:
Prod1, polymer, 91 residues, 10208.4 Da.

Natural source:

Natural source: Common Name: Eastern newt Taxonomy ID: 8316 Superkingdom: Eukaryota Kingdom: Metazoa Genus/species: Notophthalmus viridescens

Experimental source:

Experimental source: Production method: recombinant technology Host organism: Escherichia coli Vector: pET15b

Entity Sequences (FASTA):

Entity Sequences (FASTA):
Prod1: MGSSHHHHHHSSGLVPRGSH MALKCFTRNGDDRTVTTCAE EQTRCLFVQLPYSEIQECKT VQQCAEVLEEVTAIGYPAKC CCEDLCNRSEQ

Data sets:

assigned_chemical_shifts
- assigned_chem_shift_list_1

Data type	Count
13C chemical shifts	300
15N chemical shifts	69
1H chemical shifts	461

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	Prod1	1

Entities:

Entity 1, Prod1 91 residues - 10208.4 Da.

His Tag MGSSHHHHHH SSGLVPRGSH M Protein Sequence ALKCFTRNGDDRTVTTCAEEQTRCLFVQLPYSEIQECKTVQQCAEVLEEVTAIGYPAKCCCEDLCNRSEQ

1

MET

GLY

SER

HIS

2

SER

GLY

LEU

VAL

PRO

ARG

GLY

SER

HIS

3

MET

ALA

LEU

LYS

CYS

PHE

THR

ARG

ASN

GLY

4

ASP

ARG

THR

VAL

THR

CYS

ALA

GLU

5

GLU

GLN

THR

ARG

CYS

LEU

PHE

VAL

GLN

LEU

6

PRO

TYR

SER

GLU

ILE

GLN

GLU

CYS

LYS

THR

7

VAL

GLN

CYS

ALA

GLU

VAL

LEU

GLU

8

VAL

THR

ALA

ILE

GLY

TYR

PRO

ALA

LYS

CYS

9

CYS

GLU

ASP

LEU

CYS

ASN

ARG

SER

GLU

10

GLN

Name	Sample	Sample state	Sample conditions
2D 1H-15N HSQC	sample_1	isotropic	sample_conditions_1
2D 1H-13C HSQC	sample_3	isotropic	sample_conditions_1
3D 1H-15N NOESY	sample_1	isotropic	sample_conditions_1
3D 1H-13C NOESY	sample_3	isotropic	sample_conditions_1
3D 1H-13C aromatic NOESY	sample_3	isotropic	sample_conditions_1
3D CBCA(CO)NH	sample_2	isotropic	sample_conditions_1
3D HNCO	sample_2	isotropic	sample_conditions_1
3D HNCA	sample_2	isotropic	sample_conditions_1
3D HNCACB	sample_2	isotropic	sample_conditions_1
3D HN(CO)CA	sample_2	isotropic	sample_conditions_1
3D HN(CA)CO	sample_2	isotropic	sample_conditions_1
3D HA(CA)NH	sample_2	isotropic	sample_conditions_1
3D HN(CACO)NH	sample_2	isotropic	sample_conditions_1
3D HCCH-TOCSY	sample_3	isotropic	sample_conditions_1
3D HCCH-COSY	sample_3	isotropic	sample_conditions_1
3D 1H-15N TOCSY	sample_1	isotropic	sample_conditions_1

PDB	2JVE
GB	ABV29331

BMRB Entry 15477

Additional metadata:

Assembly:

Entities:

Samples:

Experiments:

Software:

NMR spectrometers:

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