BMRB Entry 15469

Name: NMR assignment of the domain 513-651 from the SARS-CoV nonstructural protein nsp3
Published: 2008-02-05

Chem Shift validation: AVS_anomalous, AVS_full, LACS
BMRB Entry DOI: doi:10.13018/BMR15469

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Nicholas Rego and David Koes
3Dmol.js: molecular visualization with WebGL
Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title:

NMR assignment of the domain 513-651 from the SARS-CoV nonstructural protein nsp3

Deposition date:

2008-01-11

Original release date:

2008-02-05

Authors:

Chatterjee, Amarnath; Johnson, Margaret; Serrano, Pedro; Pedrini, Bill; Joseph, Jeremiah; Saikatendu, Kumar; Neuman, Benjamin; Wilson, Ian; Stevens, Ray; Buchmeier, Michael; Kuhn, Peter; Wuthrich, Kurt

Citation:

Citation: Chatterjee, Amarnath; Johnson, Margaret; Serrano, Pedro; Pedrini, Bill; Wuthrich, Kurt. "NMR assignment of the domain 513-651 from the SARS-CoV nonstructural protein nsp3" Biomol. NMR Assignments 1, 191-194 (2007).
PubMed: 19636862

Assembly members:

Assembly members:
nsp3(513-651), polymer, 143 residues, Formula weight is not available

Natural source:

Natural source: Common Name: SARS virus Taxonomy ID: 227859 Superkingdom: Viruses Kingdom: not available Genus/species: Coronavirus SARS virus

Experimental source:

Experimental source: Production method: recombinant technology Host organism: Escherichia coli Vector: pET28b

Entity Sequences (FASTA):

Entity Sequences (FASTA):
nsp3(513-651): GSHMVLPSEAPNAKEEILGT VSWNLREMLAHAEETRKLMP ICMDVRAIMATIQRKYKGIK IQEGIVDYGVRFFFYTSKEP VASIITKLNSLNEPLVTMPI GYVTHGFNLEEAARCMRSLK APAVVSVSSPDAVTTYNGYL TSS

Data sets:

assigned_chemical_shifts
- assigned_chem_shift_list_1

Data type	Count
15N chemical shifts	143
1H chemical shifts	967
13C chemical shifts	615

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
Hide all

Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	nsp3(513-651)	1

Entities:

Entity 1, nsp3(513-651) 143 residues - Formula weight is not available

1

GLY

SER

HIS

MET

VAL

LEU

PRO

SER

GLU

ALA

2

PRO

ASN

ALA

LYS

GLU

ILE

LEU

GLY

THR

3

VAL

SER

TRP

ASN

LEU

ARG

GLU

MET

LEU

ALA

4

HIS

ALA

GLU

THR

ARG

LYS

LEU

MET

PRO

5

ILE

CYS

MET

ASP

VAL

ARG

ALA

ILE

MET

ALA

6

THR

ILE

GLN

ARG

LYS

TYR

LYS

GLY

ILE

LYS

7

ILE

GLN

GLU

GLY

ILE

VAL

ASP

TYR

GLY

VAL

8

ARG

PHE

TYR

THR

SER

LYS

GLU

PRO

9

VAL

ALA

SER

ILE

THR

LYS

LEU

ASN

SER

10

LEU

ASN

GLU

PRO

LEU

VAL

THR

MET

PRO

ILE

11

GLY

TYR

VAL

THR

HIS

GLY

PHE

ASN

LEU

GLU

12

GLU

ALA

ARG

CYS

MET

ARG

SER

LEU

LYS

13

ALA

PRO

ALA

VAL

SER

VAL

SER

PRO

14

ASP

ALA

VAL

THR

TYR

ASN

GLY

TYR

LEU

15

THR

SER

Samples:

sample_13C15N: nsp3(513-651), [U-99% 13C; U-98% 15N], 1.2 mM; sodium phosphate 25 mM; sodium chloride 150 mM; sodium azide 2 mM; D2O 10%; H2O 90%

sample_15N: nsp3(513-651), [U-98% 15N], 1.2 mM; sodium phosphate 25 mM; sodium chloride 150 mM; sodium azide 2 mM; D2O 10%; H2O 90%

sample_conditions_1: ionic strength: 0.227 M; pH: 6.5; pressure: 1 atm; temperature: 298 K

Experiments:

Name	Sample	Sample state	Sample conditions
2D 1H-15N HSQC	sample_15N	isotropic	sample_conditions_1
2D 1H-13C HSQC	sample_13C15N	isotropic	sample_conditions_1
3D HNCA	sample_13C15N	isotropic	sample_conditions_1
3D HNCACB	sample_13C15N	isotropic	sample_conditions_1
3D CBCA(CO)NH	sample_13C15N	isotropic	sample_conditions_1
3D HNCO	sample_13C15N	isotropic	sample_conditions_1
3D HCCH-TOCSY	sample_13C15N	isotropic	sample_conditions_1
3D HCCH-COSY	sample_13C15N	isotropic	sample_conditions_1
3D C(CO)NH	sample_13C15N	isotropic	sample_conditions_1
3D H(CCO)NH	sample_13C15N	isotropic	sample_conditions_1
3D 1H-15N TOCSY	sample_13C15N	isotropic	sample_conditions_1
3D 1H-15N NOESY	sample_13C15N	isotropic	sample_conditions_1
3D 1H-13C NOESY aliphatic region	sample_13C15N	isotropic	sample_conditions_1
3D 1H-13C NOESY aromatic region	sample_13C15N	isotropic	sample_conditions_1

Software:

CYANA v1.3, Bruker Biospin - collection, processing

CARA, Keller and Wuthrich - chemical shift assignment, data analysis, peak picking

CYANA v1.2, Guntert, Mumenthaler and Wuthrich - Creating Chemical Shift List

NMR spectrometers:

Bruker Avance 600 MHz
Bruker Avance 800 MHz

BMRB	15618 16613
PDB	2JZD 2JZE 2JZF 2KQV 2KQW 2RNK 2W2G 2WCT
DBJ	BAC81346 BAC81347 BAC81360 BAC81361 BAC81374
GB	AAP13439 AAP13442 AAP13566 AAP13575 AAP30028
REF	NP_828849 NP_828850 NP_828862
SP	P0C6T7 P0C6U8 P0C6W6 P0C6X7
AlphaFold	P0C6T7 P0C6U8 P0C6W6 P0C6X7