BMRB Entry 15295

Name: Solution structure At3g28950.1 from Arabidopsis thaliana
Published: 2007-08-15

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PDB ID: 2jqv
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_anomalous, AVS_full, LACS
BMRB Entry DOI: doi:10.13018/BMR15295
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Nicholas Rego and David Koes
3Dmol.js: molecular visualization with WebGL
Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title:

Solution structure At3g28950.1 from Arabidopsis thaliana

Deposition date:

2007-06-07

Original release date:

2007-08-15

Authors:

Volkman, B.; de la Cruz, N.; Peterson, F.

Citation:

Citation: de la Cruz, N.; Peterson, F.; Volkman, B.. "Solution structure of At3g28950 from Arabidopsis thaliana" Proteins 71, 546-551 (2008).
PubMed: 18214976

Assembly members:

Assembly members:
At3g28950.1, polymer, 165 residues, 18603.959 Da.

Natural source:

Natural source: Common Name: Thale cress Taxonomy ID: 3702 Superkingdom: Eukaryota Kingdom: Viridiplantae Genus/species: Arabidopsis thaliana

Experimental source:

Experimental source: Production method: recombinant technology Host organism: Escherichia coli Vector: pVP13

Entity Sequences (FASTA):

Entity Sequences (FASTA):
At3g28950.1: STSSDPQSHNVFVYGSILEP AVAAVILDRTADTVPAVLHG YHRYKLKGLPYPCIVSSDSG KVNGKVITGVSDAELNNFDV IEGNDYERVTVEVVRMDNSE KVKVETYVWVNKDDPRMYGE WDFEEWRVVHAEKFVETFRK MLEWNKNPNGKSMEEAVGSL LSSGD

Data sets:

assigned_chemical_shifts
- assigned_chem_shift_list_1

Data type	Count
13C chemical shifts	612
15N chemical shifts	149
1H chemical shifts	929

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	At3g28950.1	1

Entities:

Entity 1, At3g28950.1 165 residues - 18603.959 Da.

1

SER

THR

SER

ASP

PRO

GLN

SER

HIS

ASN

2

VAL

PHE

VAL

TYR

GLY

SER

ILE

LEU

GLU

PRO

3

ALA

VAL

ALA

VAL

ILE

LEU

ASP

ARG

THR

4

ALA

ASP

THR

VAL

PRO

ALA

VAL

LEU

HIS

GLY

5

TYR

HIS

ARG

TYR

LYS

LEU

LYS

GLY

LEU

PRO

6

TYR

PRO

CYS

ILE

VAL

SER

ASP

SER

GLY

7

LYS

VAL

ASN

GLY

LYS

VAL

ILE

THR

GLY

VAL

8

SER

ASP

ALA

GLU

LEU

ASN

PHE

ASP

VAL

9

ILE

GLU

GLY

ASN

ASP

TYR

GLU

ARG

VAL

THR

10

VAL

GLU

VAL

ARG

MET

ASP

ASN

SER

GLU

11

LYS

VAL

LYS

VAL

GLU

THR

TYR

VAL

TRP

VAL

12

ASN

LYS

ASP

PRO

ARG

MET

TYR

GLY

GLU

13

TRP

ASP

PHE

GLU

TRP

ARG

VAL

HIS

14

ALA

GLU

LYS

PHE

VAL

GLU

THR

PHE

ARG

LYS

15

MET

LEU

GLU

TRP

ASN

LYS

ASN

PRO

ASN

GLY

16

LYS

SER

MET

GLU

ALA

VAL

GLY

SER

LEU

17

LEU

SER

GLY

ASP

Samples:

sample: At3g28950.1, [U-100% 13C; U-100% 15N], 0.75 mM; MOPS 10 mM; sodium chloride 100 mM; DTT 5 mM

sample_conditions_1: ionic strength: 100 mM; pH: 7.0; pressure: 1 atm; temperature: 298 K

Experiments:

Name	Sample	Sample state	Sample conditions
3D_15N-separated_NOESY	sample	isotropic	sample_conditions_1
3D_13C-separated_NOESY	sample	isotropic	sample_conditions_1
3D_13C-separated_NOESY (AROMATIC)	sample	isotropic	sample_conditions_1

Software:

X-PLOR NIH v2.9.3, SCHWIETERS,C.D.,KUSZEWSKI,J.J.,TJANDRA,N.,CLORE,G.M. - refinement

xwinnmr v3.5, Bruker - collection

NMRPipe v2004, Delagio,F. et al. - processing

XEASY v1.3, Eccles, C., Guntert, P., Billeter, M., Wuthrich, K. - data analysis

SPSCAN v1.1.0, R.W. Glaser - data analysis

GARANT v2.1, C. Bartels - data analysis

CYANA v2.1, Guntert, P. - structural calculation

NMR spectrometers:

Bruker DRX 600 MHz

PDB	2JQV
DBJ	BAA95746 BAE99955
GB	AAM64749 AAO42842 AEE77512
REF	NP_189537