BMRB Entry 15227

Chem Shift validation: AVS_full
BMRB Entry DOI: doi:10.13018/BMR15227

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Title:
Duplex DNA containing an abasic site with an opposite T (alpha anomer) in 5'-G_AC-3' (10 structure ensemble and averaged structure)
Deposition date:
2007-04-28
Original release date:
2008-02-20
Authors:
Dupradeau, F.; Case, D.; Turner, C.; Stubbe, J.
Citation:

Citation: Chen, J.; Dupradeau, F.; Case, D.; Turner, C.; Stubbe, J.. "DNA oligonucleotides with A, T, G or C opposite an abasic site: structure and dynamics."  Nucleic Acids Res. 36, 253-262 (2008).
PubMed: 18025040

Assembly members:

Assembly members:
5'-D(*CP*CP*AP*AP*AP*GP*(ORP)P*AP*CP*CP*GP*GP*G)-3', polymer, 13 residues, Formula weight is not available
5'-D(*CP*CP*CP*GP*GP*TP*TP*CP*TP*TP*TP*GP*G)-3', polymer, 13 residues, Formula weight is not available

Natural source:

Natural source:   Common Name: not available   Taxonomy ID: not available   Superkingdom: not available   Kingdom: not available   Genus/species: not available not available

Experimental source:

Experimental source:   Production method: chemical synthesis

Entity Sequences (FASTA):

Entity Sequences (FASTA):
5'-D(*CP*CP*AP*AP*AP*GP*(ORP)P*AP*CP*CP*GP*GP*G)-3': CCAAAGXACCGGG
5'-D(*CP*CP*CP*GP*GP*TP*TP*CP*TP*TP*TP*GP*G)-3': CCCGTTGCTTTGG

Data sets:
Data typeCount
1H chemical shifts225

Additional metadata:

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Assembly:

Entity Assembly IDEntity NameEntity ID
11st_strand1
22nd_strand2

Entities:

Entity 1, 1st_strand 13 residues - Formula weight is not available

1   DCDCDADADADGORPDADCDC
2   DGDGDG

Entity 2, 2nd_strand 13 residues - Formula weight is not available

1   DCDCDCDGDTDTDGDCDTDT
2   DTDGDG