BMRB Entry 15183

Chem Shift validation: AVS_full
BMRB Entry DOI: doi:10.13018/BMR15183

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Nicholas Rego and David Koes
3Dmol.js: molecular visualization with WebGL
Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title:

Backbone and side-chain methyl order parameters and effective correlation times for calmodulin in complex with CaMKKalpha peptide

Deposition date:

2007-03-18

Original release date:

2007-03-18

Authors:

Marlow, Michael; Wand, Joshua

Citation:

Citation: Frederick, Kendra; Marlow, Michael; Valentine, Kathy; Wand, A. Joshua. "Conformational entropy in molecular recognition by proteins" Nature 448, 325-329 (2007).
PubMed: 17637663

Assembly members:

Assembly members:
CaMKKalpha, polymer, 28 residues, Formula weight is not available
calmodulin, polymer, 148 residues, Formula weight is not available

Natural source:

Natural source: Common Name: chicken Taxonomy ID: 9031 Superkingdom: Eukaryota Kingdom: Metazoa Genus/species: Gallus gallus

Experimental source:

Experimental source: Production method: recombinant technology Host organism: Escherichia coli Vector: pET

Entity Sequences (FASTA):

Entity Sequences (FASTA):
CaMKKalpha: GSVKLIPSWTTVILVKSMLR KRSFGNPF
calmodulin: ADQLTEEQIAEFKEAFSLFD KDGDGTITTKELGTVMRSLG QNPTEAELQDMINEVDADGN GTIDFPEFLTMMARKMKDTD SEEEIREAFRVFDKDGNGYI SAAELRHVMTNLGEKLTDEE VDEMIREADIDGDGQVNYEE FVQMMTAK

Data sets:

order_parameters
- Backbone_amide_order_parmaeters
- Side-chain_methyl_order_parameters

Data type	Count
order parameters	205

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	calmodulin	2
2	CaMKKalpha	1

Entities:

Entity 2, calmodulin 148 residues - Formula weight is not available

1

ALA

ASP

GLN

LEU

THR

GLU

GLN

ILE

ALA

2

GLU

PHE

LYS

GLU

ALA

PHE

SER

LEU

PHE

ASP

3

LYS

ASP

GLY

ASP

GLY

THR

ILE

THR

LYS

4

GLU

LEU

GLY

THR

VAL

MET

ARG

SER

LEU

GLY

5

GLN

ASN

PRO

THR

GLU

ALA

GLU

LEU

GLN

ASP

6

MET

ILE

ASN

GLU

VAL

ASP

ALA

ASP

GLY

ASN

7

GLY

THR

ILE

ASP

PHE

PRO

GLU

PHE

LEU

THR

8

MET

ALA

ARG

LYS

MET

LYS

ASP

THR

ASP

9

SER

GLU

ILE

ARG

GLU

ALA

PHE

ARG

10

VAL

PHE

ASP

LYS

ASP

GLY

ASN

GLY

TYR

ILE

11

SER

ALA

GLU

LEU

ARG

HIS

VAL

MET

THR

12

ASN

LEU

GLY

GLU

LYS

LEU

THR

ASP

GLU

13

VAL

ASP

GLU

MET

ILE

ARG

GLU

ALA

ASP

ILE

14

ASP

GLY

ASP

GLY

GLN

VAL

ASN

TYR

GLU

15

PHE

VAL

GLN

MET

THR

ALA

LYS

Entity 1, CaMKKalpha 28 residues - Formula weight is not available

1

GLY

SER

VAL

LYS

LEU

ILE

PRO

SER

TRP

THR

2

THR

VAL

ILE

LEU

VAL

LYS

SER

MET

LEU

ARG

3

LYS

ARG

SER

PHE

GLY

ASN

PRO

PHE

Samples:

sample_1: calmodulin, [U-100% 15N], 1.0 mM; CaMKKalpha1.1 – 1.2 mM

sample_2: calmodulin, [U-100% 13C; U-100% 15N; 60% 2H], 1.0 mM; CaMKKalpha1.1 – 1.2 mM

sample_conditions_1: pH: 6.5; pressure: 1 atm; temperature: 308 K

Experiments:

Name	Sample	Sample state	Sample conditions
2D 1H-15N HSQC	sample_1	isotropic	sample_conditions_1
2D 1H-15N HSQC	sample_1	isotropic	sample_conditions_1
2D 1H-13C HSQC	sample_2	isotropic	sample_conditions_1
2D 1H-13C HSQC	sample_2	isotropic	sample_conditions_1

Software:

NMRPipe, Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax - processing

NMRDraw, Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax - peak picking

SPARKY, Goddard - peak picking

NMR spectrometers:

Varian INOVA 500 MHz
Varian INOVA 750 MHz

Related Database Links:

GB	AAC31608 AAB46910 AAC42070 EDM05132 EGW04580 EHB05791 AAA35635 AAA35641 AAA37365 AAA40862 AAA40863
PDB	1CKK 1A29 1CFC 1CFD 1CFF 1CKK 1CLL 1CM1 1CM4 1CTR 1DMO 1G4Y 1IQ5 1IWQ 1K90 1K93 1L7Z 1LIN 1LVC 1MUX 1NWD 1PRW 1QIV 1QIW 1QX5 1S26 1SK6 1SY9 1UP5 1WRZ 1X02 1XA5 1XFU 1XFV 1XFW 1XFY 1XFZ 1Y0V 1YR5 2BCX 2BKI 2DFS 2F2O 2F2P 2F3Y 2F3Z 2FOT 2HQW 2JZI 2K0E 2K0F 2K0J 2K61 2KDU 2KNE 2L53 2L7L 2LGF 2LL6 2LL7 2LV6 2M0J 2M0K 2M55 2MG5 2MGU 2O5G 2O60 2R28 2V01 2V02 2VAY 2VB6 2W73 2WEL 2X0G 2Y4V 2YGG 3BXK 3BXL 3BYA 3CLN 3DVE 3DVJ 3DVK 3DVM 3EK4 3EK7 3EK8 3EKH 3EVU 3EVV 3EWT 3EWV 3G43 3GOF 3HR4 3IF7 3J41 3O77 3O78 3OXQ 3SG2 3SG3 3SG6 3SG7 3SJQ 3SUI 3U0K 3WFN 4BW7 4BW8 4BYF 4DCK 4DJC 4E50 4EHQ 4G27 4G28 4HEX 4IK1 4IK3 4IK4 4IK5 4IK8 4IK9 4J9Y 4J9Z 4JPZ 4JQ0 4L79 4LZX 4M1L 4Q5U 4QNH 4R8G 4UMO 4UPU 4V0C
DBJ	BAA75246 BAA08302 BAA11896 BAB23462 BAB28116 BAB28319
PRF	2120334A
REF	NP_113850 XP_002718907 XP_003416891 XP_003469697 XP_003509228 NP_001008160 NP_001009759 NP_001039714 NP_001080864 NP_001084025
SP	P97756 P02594 P21251 P62144 P62149 P62151
BMRB	15184 15185 15186 15187 15188 15191 15470 15624 15650 15852 16418 16465 16764 17264 17360 17771 17807 18027 18028 18556 19036 19238 19586 19604 26503 4056 5227 6541 6798 6802 6825 6830 6831 7018 7028 7029 7030 7031 7416 7417 7418 7423 7424 7425
EMBL	CAA32050 CAA32062 CAA32119 CAA32120 CAA32478
PIR	JC1305 MCON
TPG	DAA13808 DAA18029 DAA19590 DAA24777 DAA24988
AlphaFold	P97756 P62144 P02594 P62149 P62151 P21251