BMRB Entry 15137

Name: The solution structure of the monomeric species of the C terminal domain of the CA protein of HIV-1
Published: 2007-10-24

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PDB ID: 2jo0
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_full
BMRB Entry DOI: doi:10.13018/BMR15137
MolProbity Validation Chart

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Nicholas Rego and David Koes
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Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title:

The solution structure of the monomeric species of the C terminal domain of the CA protein of HIV-1

Deposition date:

2007-02-17

Original release date:

2007-10-24

Authors:

Alcaraz, Luis; del Alamo, Marta; Barrera, Francisco; Mateu, Mauricio; Neira, Jose

Citation:

Citation: Alcaraz, Luis; del Alamo, Marta; Barrera, Francisco; Mateu, Mauricio; Neira, Jose. "Flexibility in HIV-1 assembly units: solution structure and dynamics of the monomeric C-terminal domain of the capsid protein" Biophys. J. 93, 1264-1276 (2007).
PubMed: 17526561

Assembly members:

Assembly members:
CAC monomer, polymer, 87 residues, 9567.128 Da.

Natural source:

Natural source: Common Name: HIV Taxonomy ID: 11676 Superkingdom: Viruses Kingdom: not available Genus/species: Lentivirus HIV

Experimental source:

Experimental source: Production method: recombinant technology Host organism: Escherichia coli Vector: pET21b

Entity Sequences (FASTA):

Entity Sequences (FASTA):
CAC monomer: MSPTSILDIRQGPKEPFRDY VDRFYKTLRAEQASQEVKNA MTETLLVQNANPDCKTILKA LGPAATLEEMMTACQGVGGP GHKARVL

Data sets:

assigned_chemical_shifts
- assigned_chem_shift_list_1

Data type	Count
15N chemical shifts	68
1H chemical shifts	526

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	CAC monomer	1

Entities:

Entity 1, CAC monomer 87 residues - 9567.128 Da.

1

MET

SER

PRO

THR

SER

ILE

LEU

ASP

ILE

ARG

2

GLN

GLY

PRO

LYS

GLU

PRO

PHE

ARG

ASP

TYR

3

VAL

ASP

ARG

PHE

TYR

LYS

THR

LEU

ARG

ALA

4

GLU

GLN

ALA

SER

GLN

GLU

VAL

LYS

ASN

ALA

5

MET

THR

GLU

THR

LEU

VAL

GLN

ASN

ALA

6

ASN

PRO

ASP

CYS

LYS

THR

ILE

LEU

LYS

ALA

7

LEU

GLY

PRO

ALA

THR

LEU

GLU

MET

8

MET

THR

ALA

CYS

GLN

GLY

VAL

GLY

PRO

9

GLY

HIS

LYS

ALA

ARG

VAL

LEU

Name	Sample	Sample state	Sample conditions
2D NOESY	sample_1	isotropic	sample_conditions_1
2D TOCSY	sample_1	isotropic	sample_conditions_1
2D 1H-15N HSQC	sample_1	isotropic	sample_conditions_1
3D 1H-15N NOESY	sample_1	isotropic	sample_conditions_1
3D 1H-15N TOCSY	sample_1	isotropic	sample_conditions_1

Related Database Links:

BMRB	16555 17307 17738 19261 19264 19575 25532
PDB	1A43 1AUM 1BAJ 1E6J 1VU4 1VU5 1VU6 1VU7 1VU8 1VU9 1VUA 1VUC 1VUD 1VUE 1VUF 1VUG 1VUH 1VUI 1VUJ 1VUK 1VUL 1VUM 1VUN 1VUO 1VUP 1VUQ 1VUR 1VUS 1VUT 1VUU 1VUV 1VUW 1VUX 1VUY 1VUZ 1VV0 1VV1 1VV2 1VV3 1VV4 1VV5 1VV6 1VV7 1VV8 1VV9 1VVA 1VVB 1VVF 1VVG 1VVH 1VVI 2BUO 2JO0 2JYG 2JYL 2KOD 2L6E 2LF4 2M8L 2M8N 2M8P 2XT1 2XV6 2XXM 3DIK 3GV2 3H47 3H4E 3J34 3J4F 3LRY 3MGE 3NTE 3P05 3P0A 4ARG 4IPY 4QNB 4U0A 4U0B 4U0C 4U0D 4U0E 4U0F 4WYM 4XFX 4XFY 4XFZ
DBJ	BAA00992 BAA12988 BAA12996 BAA93773 BAA93774
EMBL	CAA06946 CAA11880 CAA11886 CAA77621 CAA82791
GB	AAA44201 AAA44306 AAA44652 AAA44987 AAA45003
PIR	FOVWLV
PRF	1102247B 1103299C
REF	NP_057849 NP_057850 NP_579880
SP	P03347 P03348 P03349 P03366 P03367
AlphaFold	P03347 P03348 P03349 P03366 P03367

Download HSQC peak lists in one of the following formats:
CSV: Backbone or all simulated peaks
SPARKY: Backbone or all simulated peaks

BMRB Entry 15137

Additional metadata:

Assembly:

Entities:

Samples:

Experiments:

Software:

NMR spectrometers:

Related Database Links: