BMRB Entry 11583

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PDB ID:
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_full, LACS
BMRB Entry DOI: doi:10.13018/BMR11583
MolProbity Validation Chart

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Title:
Solution structure of rat P2X4 receptor head domain
Deposition date:
2014-11-12
Original release date:
2015-01-27
Authors:
Abe, Yoshito; Igawa, Tatsuhiro; Tsuda, Makoto; Inoue, Kazuhide; Ueda, Tadashi
Citation:

Citation: Igawa, Tatsuhiro; Abe, Yoshito; Tsuda, Makoto; Inoue, Kazuhide; Ueda, Tadashi. "Solution structure of rat P2X4 receptor head domain involved in inhibitory metal binding."  FEBS Lett. ., .-..

Assembly members:

Assembly members:
P2XHD, polymer, 58 residues, 6066.745 Da.

Natural source:

Natural source:   Common Name: Rat   Taxonomy ID: 10116   Superkingdom: Eukaryota   Kingdom: Metazoa   Genus/species: Rattus norvegicus

Experimental source:

Experimental source:   Production method: recombinant technology   Host organism: Escherichia coli   Vector: pET-22b(+)

Entity Sequences (FASTA):

Entity Sequences (FASTA):
P2XHD: MQTQSTCPEIPDKTSICNSD ADCTPGSVDTHSSGVATGRC VPFNESVKTCEVAAWCPV

Data sets:
Data typeCount
1H chemical shifts353
13C chemical shifts227
15N chemical shifts56

Additional metadata:

  • Assembly
  • Samples and Experiments
  • Software
  • Spectrometers
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Assembly:

Entity Assembly IDEntity NameEntity ID
1P2XHD monomer1

Entities:

Entity 1, P2XHD monomer 58 residues - 6066.745 Da.

1   METGLNTHRGLNSERTHRCYSPROGLUILE
2   PROASPLYSTHRSERILECYSASNSERASP
3   ALAASPCYSTHRPROGLYSERVALASPTHR
4   HISSERSERGLYVALALATHRGLYARGCYS
5   VALPROPHEASNGLUSERVALLYSTHRCYS
6   GLUVALALAALATRPCYSPROVAL

Samples:

sample_1: entity, [U-99% 13C; U-99% 15N], 0.5 ± 0.2 mM; Urea 50 mM; sodium acetate 10 mM; H2O 90%; D2O, [U-100% 2H], 10%

sample_conditions_1: temperature: 297 K; pH: 5.0; pressure: 1 atm; ionic strength: 0 mM

Experiments:

NameSampleSample stateSample conditions
2D 1H-15N HSQCsample_1isotropicsample_conditions_1
2D 1H-13C HSQC aliphaticsample_1isotropicsample_conditions_1
2D 1H-13C HSQC aromaticsample_1isotropicsample_conditions_1
3D CBCA(CO)NHsample_1isotropicsample_conditions_1
3D C(CO)NHsample_1isotropicsample_conditions_1
3D HNCOsample_1isotropicsample_conditions_1
3D HNCAsample_1isotropicsample_conditions_1
3D HNCACBsample_1isotropicsample_conditions_1
3D HN(CO)CAsample_1isotropicsample_conditions_1
3D H(CCO)NHsample_1isotropicsample_conditions_1
3D 1H-15N NOESYsample_1isotropicsample_conditions_1
3D 1H-15N TOCSYsample_1isotropicsample_conditions_1
3D HCCH-TOCSYsample_1isotropicsample_conditions_1
3D HCCH-COSYsample_1isotropicsample_conditions_1
3D 1H-13C NOESYsample_1isotropicsample_conditions_1

Software:

CYANA v2.1, Guntert P. - structure solution

TALOS, Cornilescu, Delaglio and Bax - data analysis

Olivia, Hokkaido University - chemical shift assignment

NMR spectrometers:

  • Varian INOVA 600 MHz

Related Database Links:

PDB
EMBL CAA61037 CAA62607 CAA63778
GB AAA99777 AAH78792 EDM13668 EDM13669 EDM13670
PRF 2124312A
REF NP_113782
SP P51577
AlphaFold P51577

Download HSQC peak lists in one of the following formats:
CSV: Backbone or all simulated peaks
SPARKY: Backbone or all simulated peaks