BMRB Entry 11388

Name: Solution structure of the ARID domain of Jarid1b protein
Published: 2011-09-07

Chem Shift validation: AVS_anomalous, AVS_full, LACS
BMRB Entry DOI: doi:10.13018/BMR11388

NMR-STAR file interactive viewer.
NMR-STAR v3 text file.
XML gzip file.
RDF gzip file.
All files associated with the entry

Nicholas Rego and David Koes
3Dmol.js: molecular visualization with WebGL
Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

Select model:

I am color blind

Download raw data. Direct link to this display. Help

Title:

Solution structure of the ARID domain of Jarid1b protein

Deposition date:

2010-09-08

Original release date:

2011-09-07

Authors:

Tanabe, W.; Suzuki, S.; Muto, Y.; Inoue, M.; Kigawa, T.; Terada, T.; Shirouzu, M.; Yokoyama, S.

Citation:

Citation: Tanabe, W.; Suzuki, S.; Muto, Y.; Inoue, M.; Kigawa, T.; Terada, T.; Shirouzu, M.; Yokoyama, S.. "Solution structure of the ARID domain of Jarid1b protein" .

Assembly members:

Assembly members:
ARID domain, polymer, 122 residues, Formula weight is not available

Natural source:

Natural source: Common Name: house mouse Taxonomy ID: 10090 Superkingdom: Eukaryota Kingdom: Metazoa Genus/species: Mus musculus

Experimental source:

Experimental source: Production method: cell free synthesis Host organism: E. coli - cell free Vector: P060821-07

Entity Sequences (FASTA):

Entity Sequences (FASTA):
ARID domain: GSSGSSGEAQTRVKLNFLDQ IAKYWELQGSTLKIPHVERK ILDLFQLNKLVAEEGGFAVV CKDRKWTKIATKMGFAPGKA VGSHIRGHYERILNPYNLFL SGDSLRCLQKPNLTSDTKDK EY

Data sets:

assigned_chemical_shifts
- chemical_shift_1

Data type	Count
13C chemical shifts	522
15N chemical shifts	118
1H chemical shifts	835

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
Hide all

Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	ARID domain	1

Entities:

Entity 1, ARID domain 122 residues - Formula weight is not available

1

GLY

SER

GLY

SER

GLY

GLU

ALA

GLN

2

THR

ARG

VAL

LYS

LEU

ASN

PHE

LEU

ASP

GLN

3

ILE

ALA

LYS

TYR

TRP

GLU

LEU

GLN

GLY

SER

4

THR

LEU

LYS

ILE

PRO

HIS

VAL

GLU

ARG

LYS

5

ILE

LEU

ASP

LEU

PHE

GLN

LEU

ASN

LYS

LEU

6

VAL

ALA

GLU

GLY

PHE

ALA

VAL

7

CYS

LYS

ASP

ARG

LYS

TRP

THR

LYS

ILE

ALA

8

THR

LYS

MET

GLY

PHE

ALA

PRO

GLY

LYS

ALA

9

VAL

GLY

SER

HIS

ILE

ARG

GLY

HIS

TYR

GLU

10

ARG

ILE

LEU

ASN

PRO

TYR

ASN

LEU

PHE

LEU

11

SER

GLY

ASP

SER

LEU

ARG

CYS

LEU

GLN

LYS

12

PRO

ASN

LEU

THR

SER

ASP

THR

LYS

ASP

LYS

13

GLU

TYR

Samples:

sample_1: ARID domain, [U-13C; U-15N], 0.77 mM; d-Tris-HCl 20 mM; NaCl 100 mM; d-DTT 1 mM; NaN3 0.02%; H2O 90%; D2O 10%

condition_1: ionic strength: 120 mM; pH: 7.0; pressure: 1 atm; temperature: 298 K

Experiments:

Name	Sample	Sample state	Sample conditions
3D 15N-separated NOESY	sample_1	isotropic	condition_1
3D 13C-separated NOESY	sample_1	isotropic	condition_1

Software:

xwinnmr v3.5, Bruker - collection

NMRPipe v20060702, Delaglio, F. - processing

NMRView v5.0.4, Johnson, B.A. - data analysis

Kujira v0.9820, Kobayashi, N. - data analysis

CYANA v2.0.17, Guntert, P. - refinement, structure solution

NMR spectrometers:

Bruker AVANCE 800 MHz

BMRB	15732
PDB	2EQY
DBJ	BAC30898 BAD90482 BAE37363
EMBL	CAB43532 CAB63108
GB	AAD16061 AAH48180 AAH57318 AAI56050 AAI57032
REF	NP_001100647 NP_001300971 NP_006609 NP_690855 XP_002717636
SP	Q80Y84 Q9UGL1
TPG	DAA21261
AlphaFold	Q80Y84 Q9UGL1