BMRB Entry 11384

Chem Shift validation: AVS_full, LACS
BMRB Entry DOI: doi:10.13018/BMR11384

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Nicholas Rego and David Koes
3Dmol.js: molecular visualization with WebGL
Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title:

Solution structure of the 24th C2H2 type zinc finger domain of Zinc finger protein 268

Deposition date:

2010-09-08

Original release date:

2011-09-07

Authors:

Tanabe, W.; Suzuki, S.; Muto, Y.; Inoue, M.; Kigawa, T.; Terada, T.; Shirouzu, M.; Yokoyama, S.

Citation:

Citation: Tanabe, W.; Suzuki, S.; Muto, Y.; Inoue, M.; Kigawa, T.; Terada, T.; Shirouzu, M.; Yokoyama, S.. "Solution structure of the 24th C2H2 type zinc finger domain of Zinc finger protein 268" .

Assembly members:

Assembly members:
zinc finger domain, UNP residues 915-947, polymer, 46 residues, Formula weight is not available
ZN, non-polymer, 65.409 Da.

Natural source:

Natural source: Common Name: human Taxonomy ID: 9606 Superkingdom: Eukaryota Kingdom: Metazoa Genus/species: Homo sapiens

Experimental source:

Experimental source: Production method: cell free synthesis Host organism: E. coli - cell free Vector: P061225-05

Entity Sequences (FASTA):

Entity Sequences (FASTA):
zinc finger domain, UNP residues 915-947: GSSGSSGTGEKPCKCTECGK AFCWKSQLIMHQRTHVDDKH SGPSSG

Data sets:

assigned_chemical_shifts
- chemical_shift_1

Data type	Count
13C chemical shifts	154
15N chemical shifts	34
1H chemical shifts	221

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	zinc finger domain, UNP residues 915-947	1
2	ZINC ION	2

Entities:

Entity 1, zinc finger domain, UNP residues 915-947 46 residues - Formula weight is not available

1

GLY

SER

GLY

SER

GLY

THR

GLY

GLU

2

LYS

PRO

CYS

LYS

CYS

THR

GLU

CYS

GLY

LYS

3

ALA

PHE

CYS

TRP

LYS

SER

GLN

LEU

ILE

MET

4

HIS

GLN

ARG

THR

HIS

VAL

ASP

LYS

HIS

5

SER

GLY

PRO

SER

GLY

Entity 2, ZINC ION - Zn - 65.409 Da.

1

ZN

Samples:

sample_1: zinc finger domain, UNP residues 915-947, [U-13C; U-15N], 1.15 mM; d-Tris-HCl 20 mM; NaCl 100 mM; d-DTT 1 mM; NaN3 0.02%; ZnCl2 0.05 mM; IDA 1 mM; H2O 90%; D2O 10%

condition_1: ionic strength: 120 mM; pH: 7.0; pressure: 1 atm; temperature: 298 K

Experiments:

Name	Sample	Sample state	Sample conditions
3D 15N-separated NOESY	sample_1	isotropic	condition_1
3D 13C-separated NOESY	sample_1	isotropic	condition_1

Software:

xwinnmr v3.5, Bruker - collection

NMRPipe v20060702, Delaglio, F. - processing

NMRView v5.0.4, Johnson, B.A. - data analysis

Kujira v0.9820, Kobayashi, N. - data analysis

CYANA v2.1, Guntert, P. - refinement, structure solution

NMR spectrometers:

Bruker AVANCE 700 MHz