BMRB Entry 11343

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PDB ID: 2ecm
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_full, LACS
BMRB Entry DOI: doi:10.13018/BMR11343
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Nicholas Rego and David Koes
3Dmol.js: molecular visualization with WebGL
Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title:

Solution structure of the RING domain of the RING finger and CHY zinc finger domain-containing protein 1 from Mus musculus

Deposition date:

2010-08-10

Original release date:

2011-08-19

Authors:

Miyamoto, K.; Yoneyama, M.; Koshiba, S.; Watanabe, S.; Harada, T.; Kigawa, T.; Yokoyama, S.

Citation:

Citation: Miyamoto, K.; Yoneyama, M.; Koshiba, S.; Watanabe, S.; Harada, T.; Kigawa, T.; Yokoyama, S.. "Solution structure of the RING domain of the RING finger and CHY zinc finger domain-containing protein 1 from Mus musculus" .

Assembly members:

Assembly members:
RING domain, polymer, 55 residues, Formula weight is not available
ZN, non-polymer, 65.409 Da.

Natural source:

Natural source: Common Name: house mouse Taxonomy ID: 10090 Superkingdom: Eukaryota Kingdom: Metazoa Genus/species: Mus musculus

Experimental source:

Experimental source: Production method: cell free synthesis Host organism: E. coli - cell free Vector: P060911-23

Entity Sequences (FASTA):

Entity Sequences (FASTA):
RING domain: GSSGSSGCPICLEDIHTSRV VAHVLPCGHLLHRTCYEEML KEGYRCPLCSGPSSG

Data sets:

assigned_chemical_shifts
- chemical_shift_1

Data type	Count
13C chemical shifts	221
15N chemical shifts	46
1H chemical shifts	336

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	RING domain	1
2	ZINC ION no.1	2
3	ZINC ION no.2	2

Entities:

Entity 1, RING domain 55 residues - Formula weight is not available

1

GLY

SER

GLY

SER

GLY

CYS

PRO

ILE

2

CYS

LEU

GLU

ASP

ILE

HIS

THR

SER

ARG

VAL

3

VAL

ALA

HIS

VAL

LEU

PRO

CYS

GLY

HIS

LEU

4

LEU

HIS

ARG

THR

CYS

TYR

GLU

MET

LEU

5

LYS

GLU

GLY

TYR

ARG

CYS

PRO

LEU

CYS

SER

6

GLY

PRO

SER

GLY

Entity 2, ZINC ION no.1 - Zn - 65.409 Da.

1

ZN

Samples:

sample_1: RING domain, [U-13C; U-15N], 1.13 mM; d-Tris-HCl 20 mM; NaCl 100 mM; d-DTT 1 mM; NaN3 0.02%; ZnCl2 0.05 mM; IDA 1.0 mM; H2O 90%; D2O 10%

condition_1: ionic strength: 120 mM; pH: 7.0; pressure: 1 atm; temperature: 296 K

Experiments:

Name	Sample	Sample state	Sample conditions
3D 13C-separated NOESY	sample_1	isotropic	condition_1
3D 15N-separated NOESY	sample_1	isotropic	condition_1

Software:

xwinnmr v3.5, Bruker - collection

NMRPipe v20031121, Delaglio, F. - processing

NMRView v5.0.4, Johnson, B. A. - data analysis

Kujira v0.9820, Kobayashi, N. - data analysis

CYANA v2.0.17, Guntert, P. - refinement, structure solution

NMR spectrometers:

Bruker AVANCE 800 MHz

PDB	2ECM
REF	XP_003479597 XP_006142996 XP_013965461 XP_013965464