BMRB Entry 11336

Name: Solution Structure of the RING domain of the human ring finger protein 4
Published: 2011-08-19

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PDB ID: 2ea6
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_full, LACS
BMRB Entry DOI: doi:10.13018/BMR11336
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Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title:

Solution Structure of the RING domain of the human ring finger protein 4

Deposition date:

2010-08-10

Original release date:

2011-08-19

Authors:

Miyamoto, K.; Yoneyama, M.; Tomizawa, T.; Koshiba, S.; Watanabe, S.; Harada, T.; Kigawa, T.; Yokoyama, S.

Citation:

Citation: Miyamoto, K.; Yoneyama, M.; Tomizawa, T.; Koshiba, S.; Watanabe, S.; Harada, T.; Kigawa, T.; Yokoyama, S.. "Solution Structure of the RING domain of the human ring finger protein 4" .

Assembly members:

Assembly members:
RING domain, polymer, 69 residues, Formula weight is not available
ZN, non-polymer, 65.409 Da.

Natural source:

Natural source: Common Name: human Taxonomy ID: 9606 Superkingdom: Eukaryota Kingdom: Metazoa Genus/species: Homo sapiens

Experimental source:

Experimental source: Production method: cell free synthesis Host organism: E. coli - cell free Vector: P060327-06

Entity Sequences (FASTA):

Entity Sequences (FASTA):
RING domain: GSSGSSGTGLRPSGTVSCPI CMDGYSEIVQNGRLIVSTEC GHVFCSQCLRDSLKNANTCP TCRKKINHK

Data sets:

assigned_chemical_shifts
- chemical_shift_1

Data type	Count
13C chemical shifts	265
15N chemical shifts	63
1H chemical shifts	418

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	RING domain	1
2	ZINC ION no.1	2
3	ZINC ION no.2	2

Entities:

Entity 1, RING domain 69 residues - Formula weight is not available

1

GLY

SER

GLY

SER

GLY

THR

GLY

LEU

2

ARG

PRO

SER

GLY

THR

VAL

SER

CYS

PRO

ILE

3

CYS

MET

ASP

GLY

TYR

SER

GLU

ILE

VAL

GLN

4

ASN

GLY

ARG

LEU

ILE

VAL

SER

THR

GLU

CYS

5

GLY

HIS

VAL

PHE

CYS

SER

GLN

CYS

LEU

ARG

6

ASP

SER

LEU

LYS

ASN

ALA

ASN

THR

CYS

PRO

7

THR

CYS

ARG

LYS

ILE

ASN

HIS

LYS

Entity 2, ZINC ION no.1 - Zn - 65.409 Da.

1

ZN

Samples:

sample_1: RING domain, [U-13C; U-15N], 1.03 mM; d-Tris-HCl 20 mM; NaCl 100 mM; d-DTT 1 mM; NaN3 0.02%; ZnCl2 0.05 mM; IDA 1.0 mM; H2O 90%; D2O 10%

condition_1: ionic strength: 120 mM; pH: 7.0; pressure: 1 atm; temperature: 298 K

Experiments:

Name	Sample	Sample state	Sample conditions
3D 15N-separated NOESY	sample_1	isotropic	condition_1
3D 13C-separated NOESY	sample_1	isotropic	condition_1

Software:

xwinnmr v3.5, Bruker - collection

NMRPipe v20031121, Delaglio, F. - processing

NMRView v5.0.4, Johnson, B. A. - data analysis

Kujira v0.9820, Kobayashi, N. - data analysis

CYANA v2.0.17, Guntert, P. - refinement, structure solution

NMR spectrometers:

Bruker AVANCE 800 MHz

PDB	2EA6 3NG2 4AP4 5AIT 5AIU
DBJ	BAA19122 BAG35433 BAG54620 BAG73691
GB	AAC35248 AAC52022 AAH31935 AAH62024 AAL06715
REF	NP_001171938 NP_002929 NP_062055 XP_003890937 XP_004038387
SP	O88846 P78317
AlphaFold	O88846 P78317