BMRB Entry 11322

Name: Solution structure of the SANT domain of human KIAA1915 protein
Published: 2010-12-01

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PDB ID: 2cu7
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_full, LACS
BMRB Entry DOI: doi:10.13018/BMR11322
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Nicholas Rego and David Koes
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Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title:

Solution structure of the SANT domain of human KIAA1915 protein

Deposition date:

2010-08-10

Original release date:

2010-12-01

Authors:

Yoneyama, M.; Umehara, T.; Saito, K.; Tochio, N.; Koshiba, S.; Inoue, M.; Tanaka, A.; Kigawa, T.; Yokoyama, S.

Citation:

Citation: Yoneyama, Misao; Tochio, Naoya; Umehara, Takashi; Koshiba, Seizo; Inoue, Makoto; Yabuki, Takashi; Aoki, Masaaki; Seki, Eiko; Matsuda, Takayoshi; Watanabe, Satoru; Tomo, Yasuko; Nishimura, Yuji; Harada, Takushi; Terada, Takaho; Shirouzu, Mikako; Hayashizaki, Yoshihide; Ohara, Osamu; Tanaka, Akiko; Kigawa, Takanori; Yokoyama, Shigeyuki. "Structural and functional differences of SWIRM domain subtypes." J. Mol. Biol. 369, 222-238 (2007).
PubMed: 17428495

Assembly members:

Assembly members:
SANT domain, polymer, 72 residues, Formula weight is not available

Natural source:

Natural source: Common Name: human Taxonomy ID: 9606 Superkingdom: Eukaryota Kingdom: Metazoa Genus/species: Homo sapiens

Experimental source:

Experimental source: Production method: cell free synthesis Host organism: E. coli - cell free Vector: P041018-13

Entity Sequences (FASTA):

Entity Sequences (FASTA):
SANT domain: GSSGSSGYSVKWTIEEKELF EQGLAKFGRRWTKISKLIGS RTVLQVKSYARQYFKNKVKC GLDKETPNQKTG

Data sets:

assigned_chemical_shifts
- chemical_shift_1

Data type	Count
13C chemical shifts	329
15N chemical shifts	80
1H chemical shifts	519

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	SANT domain	1

Entities:

Entity 1, SANT domain 72 residues - Formula weight is not available

1

GLY

SER

GLY

SER

GLY

TYR

SER

VAL

2

LYS

TRP

THR

ILE

GLU

LYS

GLU

LEU

PHE

3

GLU

GLN

GLY

LEU

ALA

LYS

PHE

GLY

ARG

4

TRP

THR

LYS

ILE

SER

LYS

LEU

ILE

GLY

SER

5

ARG

THR

VAL

LEU

GLN

VAL

LYS

SER

TYR

ALA

6

ARG

GLN

TYR

PHE

LYS

ASN

LYS

VAL

LYS

CYS

7

GLY

LEU

ASP

LYS

GLU

THR

PRO

ASN

GLN

LYS

8

THR

GLY

Samples:

sample_1: SANT domain, [U-13C; U-15N], 0.83 mM; Acetate buffer Na 20 mM; NaCl 100 mM; d-DTT 1 mM; NaN3 0.02%; H2O 90%; D2O 10%

condition_1: ionic strength: 120 mM; pH: 4.5; pressure: 1 atm; temperature: 298 K

Experiments:

Name	Sample	Sample state	Sample conditions
3D 15N-separated NOESY	sample_1	isotropic	condition_1
3D 13C-separated NOESY	sample_1	isotropic	condition_1

Software:

xwinnmr v2.6, Bruker - collection

NMRPipe v20020425, Delaglio, F. - processing

NMRView v5.0.4, Johnson, B. A. - data analysis

Kujira v0.9295, Kobayashi, N. - data analysis

CYANA v2.0.17, Guntert, P. - refinement, structure solution

NMR spectrometers:

Bruker AVANCE 800 MHz

PDB	2CU7
DBJ	BAB67808
GB	AAI67849
REF	NP_001078956 XP_003824269 XP_004025928 XP_006710377 XP_008976222
SP	Q5VVJ2
AlphaFold	Q5VVJ2