BMRB Entry 11310

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PDB ID: 1wjw
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_full, LACS
BMRB Entry DOI: doi:10.13018/BMR11310
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Nicholas Rego and David Koes
3Dmol.js: molecular visualization with WebGL
Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title:

Solution structure of the C-terminal domain of mouse phosphoacetylglucosamine mutase (PAGM)

Deposition date:

2010-08-10

Original release date:

2011-08-19

Authors:

Yoneyama, M.; Tochio, N.; Saito, K.; Koshiba, S.; Inoue, M.; Kigawa, T.; Yokoyama, S.

Citation:

Citation: Yoneyama, M.; Tochio, N.; Saito, K.; Koshiba, S.; Inoue, M.; Kigawa, T.; Yokoyama, S.. "Solution structure of the C-terminal domain of mouse phosphoacetylglucosamine mutase (PAGM)" .

Assembly members:

Assembly members:
C-terminal domain, polymer, 112 residues, Formula weight is not available

Natural source:

Natural source: Common Name: house mouse Taxonomy ID: 10090 Superkingdom: Eukaryota Kingdom: Metazoa Genus/species: Mus musculus

Experimental source:

Experimental source: Production method: cell free synthesis Host organism: E. coli - cell free Vector: P040113-52

Entity Sequences (FASTA):

Entity Sequences (FASTA):
C-terminal domain: GSSGSSGAIYVDLPNRQLKV KVADRRVISTTDAERQAVTP PGLQEAINDLVKKYTLARAF VRPSGTEDIVRVYAEANSQE SADRLAYEVSLLVFQLAGGI GERPQPSGPSSG

Data sets:

assigned_chemical_shifts
- chemical_shift_1

Data type	Count
13C chemical shifts	440
15N chemical shifts	103
1H chemical shifts	719

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	C-terminal domain	1

Entities:

Entity 1, C-terminal domain 112 residues - Formula weight is not available

1

GLY

SER

GLY

SER

GLY

ALA

ILE

TYR

2

VAL

ASP

LEU

PRO

ASN

ARG

GLN

LEU

LYS

VAL

3

LYS

VAL

ALA

ASP

ARG

VAL

ILE

SER

THR

4

THR

ASP

ALA

GLU

ARG

GLN

ALA

VAL

THR

PRO

5

PRO

GLY

LEU

GLN

GLU

ALA

ILE

ASN

ASP

LEU

6

VAL

LYS

TYR

THR

LEU

ALA

ARG

ALA

PHE

7

VAL

ARG

PRO

SER

GLY

THR

GLU

ASP

ILE

VAL

8

ARG

VAL

TYR

ALA

GLU

ALA

ASN

SER

GLN

GLU

9

SER

ALA

ASP

ARG

LEU

ALA

TYR

GLU

VAL

SER

10

LEU

VAL

PHE

GLN

LEU

ALA

GLY

ILE

11

GLY

GLU

ARG

PRO

GLN

PRO

SER

GLY

PRO

SER

12

SER

GLY

Samples:

sample_1: C-terminal domain of Phosphoacetylglucosamine mutase(PAGM), [U-13C; U-15N], 1 mM; Phosphate Buffer Na 20 mM; NaCl 300 mM; d-DTT 1 mM; NaN3 0.02%; H2O 90%; D2O 10%

condition_1: ionic strength: 320 mM; pH: 6.0; pressure: 1 atm; temperature: 298 K

Experiments:

Name	Sample	Sample state	Sample conditions
3D 15N-separated NOESY	sample_1	isotropic	condition_1
3D 13C-separated NOESY	sample_1	isotropic	condition_1

Software:

xwinnmr v2.6, Bruker - collection

NMRPipe v20020425, Delagio, F. - processing

NMRView v5.0.4, Jhonson, B. A. - data analysis

Kujira v0.896, Kobayashi, N. - data analysis

CYANA v1.0.8, Guntert, P. - refinement, structure solution

NMR spectrometers:

Bruker AVANCE 800 MHz

PDB	1WJW
DBJ	BAB28834 BAC25733 BAC29478 BAC33692 BAC34728
GB	AAI38701 EDL26495
REF	NP_082628 XP_011240958
SP	Q9CYR6
AlphaFold	Q9CYR6