BMRB Entry 11297

Name: Solusion structure of the Todor domain of human Lamin-B receptor
Published: 2011-08-19

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PDB ID: 2dig
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_full, LACS
BMRB Entry DOI: doi:10.13018/BMR11297
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Nicholas Rego and David Koes
3Dmol.js: molecular visualization with WebGL
Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title:

Solusion structure of the Todor domain of human Lamin-B receptor

Deposition date:

2010-08-09

Original release date:

2011-08-19

Authors:

Yoneyama, M.; Tochio, N.; Koshiba, S.; Inoue, M.; Kigawa, T.; Yokoyama, S.

Citation:

Citation: Yoneyama, M.; Tochio, N.; Koshiba, S.; Inoue, M.; Kigawa, T.; Yokoyama, S.. "Solusion structure of the Todor domain of human Lamin-B receptor" .

Assembly members:

Assembly members:
Tudor domain, polymer, 68 residues, Formula weight is not available

Natural source:

Natural source: Common Name: human Taxonomy ID: 9606 Superkingdom: Eukaryota Kingdom: Metazoa Genus/species: Homo sapiens

Experimental source:

Experimental source: Production method: cell free synthesis Host organism: E. coli - cell free Vector: P050905-15

Entity Sequences (FASTA):

Entity Sequences (FASTA):
Tudor domain: GSSGSSGMPSRKFADGEVVR GRWPGSSLYYEVEILSHDST SQLYTVKYKDGTELELKEND IKSGPSSG

Data sets:

assigned_chemical_shifts
- chemical_shift_1

Data type	Count
13C chemical shifts	258
15N chemical shifts	59
1H chemical shifts	408

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	Tudor domain	1

Entities:

Entity 1, Tudor domain 68 residues - Formula weight is not available

1

GLY

SER

GLY

SER

GLY

MET

PRO

SER

2

ARG

LYS

PHE

ALA

ASP

GLY

GLU

VAL

ARG

3

GLY

ARG

TRP

PRO

GLY

SER

LEU

TYR

4

GLU

VAL

GLU

ILE

LEU

SER

HIS

ASP

SER

THR

5

SER

GLN

LEU

TYR

THR

VAL

LYS

TYR

LYS

ASP

6

GLY

THR

GLU

LEU

GLU

LEU

LYS

GLU

ASN

ASP

7

ILE

LYS

SER

GLY

PRO

SER

GLY

Samples:

sample_1: Tudor domain, [U-13C; U-15N], 1.17 mM; d-Tris-HCl 20 mM; NaCl 100 mM; d-DTT 1 mM; NaN3 0.02%; H2O 90%; D2O 10%

condition_1: ionic strength: 120 mM; pH: 7.0; pressure: 1 atm; temperature: 296 K

Experiments:

Name	Sample	Sample state	Sample conditions
3D 15N-separated NOESY	sample_1	isotropic	condition_1
3D 13C-separated NOESY	sample_1	isotropic	condition_1

Software:

xwinnmr v3.5, Bruker - collection

NMRPipe v20030801, Delaglio, F. - processing

NMRView v5.0.4, Johnson, B. A. - data analysis

Kujira v0.9736, Kobayashi, N. - data analysis

CYANA v2.0.17, Guntert, P. - refinement, structure solution

NMR spectrometers:

Bruker AVANCE 800 MHz

PDB	2DIG
DBJ	BAD92751 BAD96554 BAG10816 BAG35190 BAG64605
EMBL	CAH92286
GB	AAA59494 AAA59495 AAH20079 ABM81975 ABM85153
REF	NP_001127533 NP_001248262 NP_002287 NP_919424 XP_002760653
SP	Q14739 Q5R7H4
AlphaFold	Q14739 Q5R7H4