BMRB Entry 11277

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PDB ID: 2dhz
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_anomalous, AVS_full, LACS
BMRB Entry DOI: doi:10.13018/BMR11277
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Nicholas Rego and David Koes
3Dmol.js: molecular visualization with WebGL
Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title:

Solution Structure of the RA Domain in the Human Link Guanine Nucleotide Exchange Factor II (Link-GEFII)

Deposition date:

2010-08-09

Original release date:

2011-08-18

Authors:

Zhao, C.; Kigawa, T.; Yoneyama, M.; Koshiba, S.; Harada, T.; Watanabe, S.; Yokoyama, S.

Citation:

Citation: Zhao, C.; Kigawa, T.; Yoneyama, M.; Koshiba, S.; Harada, T.; Watanabe, S.; Yokoyama, S.. "Solution Structure of the RA Domain in the Human Link Guanine Nucleotide Exchange Factor II (Link-GEFII)" .

Assembly members:

Assembly members:
RA domain, polymer, 120 residues, Formula weight is not available

Natural source:

Natural source: Common Name: human Taxonomy ID: 9606 Superkingdom: Eukaryota Kingdom: Metazoa Genus/species: Homo sapiens

Experimental source:

Experimental source: Production method: cell free synthesis Host organism: E. coli - cell free Vector: P051212-12

Entity Sequences (FASTA):

Entity Sequences (FASTA):
RA domain: GSSGSSGDEIFCRVYMPDHS YVTIRSRLSASVQDILGSVT EKLQYSEEPAGREDSLILVA VSSSGEKVLLQPTEDCVFTA LGINSHLFACTRDSYEALVP LPEEIQVSPGDTEISGPSSG

Data sets:

assigned_chemical_shifts
- chemical_shift_1

Data type	Count
13C chemical shifts	487
15N chemical shifts	108
1H chemical shifts	752

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	RA domain	1

Entities:

Entity 1, RA domain 120 residues - Formula weight is not available

1	GLY	SER	SER	GLY	SER	SER	GLY	ASP	GLU	ILE
2	PHE	CYS	ARG	VAL	TYR	MET	PRO	ASP	HIS	SER
3	TYR	VAL	THR	ILE	ARG	SER	ARG	LEU	SER	ALA
4	SER	VAL	GLN	ASP	ILE	LEU	GLY	SER	VAL	THR
5	GLU	LYS	LEU	GLN	TYR	SER	GLU	GLU	PRO	ALA
6	GLY	ARG	GLU	ASP	SER	LEU	ILE	LEU	VAL	ALA
7	VAL	SER	SER	SER	GLY	GLU	LYS	VAL	LEU	LEU
8	GLN	PRO	THR	GLU	ASP	CYS	VAL	PHE	THR	ALA
9	LEU	GLY	ILE	ASN	SER	HIS	LEU	PHE	ALA	CYS
10	THR	ARG	ASP	SER	TYR	GLU	ALA	LEU	VAL	PRO
11	LEU	PRO	GLU	GLU	ILE	GLN	VAL	SER	PRO	GLY
12	ASP	THR	GLU	ILE	SER	GLY	PRO	SER	SER	GLY

Name	Sample	Sample state	Sample conditions
3D 15N-separated NOESY	sample_1	isotropic	condition_1
3D 13C-separated NOESY	sample_1	isotropic	condition_1

PDB	2DHZ
DBJ	BAG36274 BAG57820 BAH14121
EMBL	CAH91648
GB	AAF22003 AAI15375 AAI15376 ABG81429 EAW60645
REF	NP_001125968 NP_001192336 NP_001290462 NP_001290463 NP_057423
SP	Q5R9B2 Q9UHV5
AlphaFold	Q5R9B2 Q9UHV5

BMRB Entry 11277

Additional metadata:

Assembly:

Entities:

Samples:

Experiments:

Software:

NMR spectrometers:

Related Database Links:

1	GLY	SER	SER	GLY	SER	SER	GLY	ASP	GLU	ILE
2	PHE	CYS	ARG	VAL	TYR	MET	PRO	ASP	HIS	SER
3	TYR	VAL	THR	ILE	ARG	SER	ARG	LEU	SER	ALA
4	SER	VAL	GLN	ASP	ILE	LEU	GLY	SER	VAL	THR
5	GLU	LYS	LEU	GLN	TYR	SER	GLU	GLU	PRO	ALA
6	GLY	ARG	GLU	ASP	SER	LEU	ILE	LEU	VAL	ALA
7	VAL	SER	SER	SER	GLY	GLU	LYS	VAL	LEU	LEU
8	GLN	PRO	THR	GLU	ASP	CYS	VAL	PHE	THR	ALA
9	LEU	GLY	ILE	ASN	SER	HIS	LEU	PHE	ALA	CYS
10	THR	ARG	ASP	SER	TYR	GLU	ALA	LEU	VAL	PRO
11	LEU	PRO	GLU	GLU	ILE	GLN	VAL	SER	PRO	GLY
12	ASP	THR	GLU	ILE	SER	GLY	PRO	SER	SER	GLY

1	GLY	SER	SER	GLY	SER	SER	GLY	ASP	GLU	ILE
2	PHE	CYS	ARG	VAL	TYR	MET	PRO	ASP	HIS	SER
3	TYR	VAL	THR	ILE	ARG	SER	ARG	LEU	SER	ALA
4	SER	VAL	GLN	ASP	ILE	LEU	GLY	SER	VAL	THR
5	GLU	LYS	LEU	GLN	TYR	SER	GLU	GLU	PRO	ALA
6	GLY	ARG	GLU	ASP	SER	LEU	ILE	LEU	VAL	ALA
7	VAL	SER	SER	SER	GLY	GLU	LYS	VAL	LEU	LEU
8	GLN	PRO	THR	GLU	ASP	CYS	VAL	PHE	THR	ALA
9	LEU	GLY	ILE	ASN	SER	HIS	LEU	PHE	ALA	CYS
10	THR	ARG	ASP	SER	TYR	GLU	ALA	LEU	VAL	PRO
11	LEU	PRO	GLU	GLU	ILE	GLN	VAL	SER	PRO	GLY
12	ASP	THR	GLU	ILE	SER	GLY	PRO	SER	SER	GLY

1	GLY	SER	SER	GLY	SER	SER	GLY	ASP	GLU	ILE
2	PHE	CYS	ARG	VAL	TYR	MET	PRO	ASP	HIS	SER
3	TYR	VAL	THR	ILE	ARG	SER	ARG	LEU	SER	ALA
4	SER	VAL	GLN	ASP	ILE	LEU	GLY	SER	VAL	THR
5	GLU	LYS	LEU	GLN	TYR	SER	GLU	GLU	PRO	ALA
6	GLY	ARG	GLU	ASP	SER	LEU	ILE	LEU	VAL	ALA
7	VAL	SER	SER	SER	GLY	GLU	LYS	VAL	LEU	LEU
8	GLN	PRO	THR	GLU	ASP	CYS	VAL	PHE	THR	ALA
9	LEU	GLY	ILE	ASN	SER	HIS	LEU	PHE	ALA	CYS
10	THR	ARG	ASP	SER	TYR	GLU	ALA	LEU	VAL	PRO
11	LEU	PRO	GLU	GLU	ILE	GLN	VAL	SER	PRO	GLY
12	ASP	THR	GLU	ILE	SER	GLY	PRO	SER	SER	GLY