BMRB Entry 11274

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PDB ID: 2dam
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_full, LACS
BMRB Entry DOI: doi:10.13018/BMR11274
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Nicholas Rego and David Koes
3Dmol.js: molecular visualization with WebGL
Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title:

Solution Structure of the Novel Identified UBA-like Domain in the N-terminal of Human ETEA Protein

Deposition date:

2010-08-09

Original release date:

2011-08-18

Authors:

Zhao, C.; Kigawa, T.; Yoneyama, M.; Koshiba, S.; Inoue, M.; Yokoyama, S.

Citation:

Citation: Zhao, C.; Kigawa, T.; Yoneyama, M.; Koshiba, S.; Inoue, M.; Yokoyama, S.. "Solution Structure of the Novel Identified UBA-like Domain in the N-terminal of Human ETEA Protein" .

Assembly members:

Assembly members:
UBA-like domain, polymer, 67 residues, Formula weight is not available

Natural source:

Natural source: Common Name: human Taxonomy ID: 9606 Superkingdom: Eukaryota Kingdom: Metazoa Genus/species: Homo sapiens

Experimental source:

Experimental source: Production method: cell free synthesis Host organism: E. coli - cell free Vector: P050815-22

Entity Sequences (FASTA):

Entity Sequences (FASTA):
UBA-like domain: GSSGSSGAPEERDLTQEQTE KLLQFQDLTGIESMDQCRHT LEQHNWNIEAAVQDRLNEQE GSGPSSG

Data sets:

assigned_chemical_shifts
- chemical_shift_1

Data type	Count
13C chemical shifts	251
15N chemical shifts	68
1H chemical shifts	399

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	UBA-like domain	1

Entities:

Entity 1, UBA-like domain 67 residues - Formula weight is not available

1

GLY

SER

GLY

SER

GLY

ALA

PRO

GLU

2

GLU

ARG

ASP

LEU

THR

GLN

GLU

GLN

THR

GLU

3

LYS

LEU

GLN

PHE

GLN

ASP

LEU

THR

GLY

4

ILE

GLU

SER

MET

ASP

GLN

CYS

ARG

HIS

THR

5

LEU

GLU

GLN

HIS

ASN

TRP

ASN

ILE

GLU

ALA

6

ALA

VAL

GLN

ASP

ARG

LEU

ASN

GLU

GLN

GLU

7

GLY

SER

GLY

PRO

SER

GLY

Samples:

sample_1: UBA-like domain, [U-13C; U-15N], 1.02 mM; d-Tris-HCl 20 mM; NaCl 100 mM; d-DTT 1 mM; NaN3 0.02%; H2O 90%; D2O 10%

condition_1: ionic strength: 120 mM; pH: 7.0; pressure: 1 atm; temperature: 298.0 K

Experiments:

Name	Sample	Sample state	Sample conditions
3D 15N-separated NOESY	sample_1	isotropic	condition_1
3D 13C-separated NOESY	sample_1	isotropic	condition_1

Software:

xwinnmr v2.6, Bruker - collection

NMRPipe v20030801, Delaglio, F. - processing

NMRView v5.0.4, Johnson, B., A. - data analysis

Kujira v0.9321, Kobayashi, N. - data analysis

CYANA v1.0.8, Guntert, P. - refinement, structure solution

NMR spectrometers:

Bruker AVANCE 800 MHz

PDB	2DAM
DBJ	BAA74910 BAC22491 BAG09890 BAG65190
GB	AAH01069 AAH06145 AAH14001 AAI05573 AIC50926
REF	NP_001070488 NP_001247827 NP_055428 XP_001517276 XP_002710457
SP	Q2HJD0 Q96CS3
TPG	DAA27671
AlphaFold	Q2HJD0 Q96CS3