BMRB Entry 11267

Name: Solution Structure of Human SUMO-2 (SMT3B), a Ubiquitin-like Protein
Published: 2011-08-18

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PDB ID: 1wz0
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_full, LACS
BMRB Entry DOI: doi:10.13018/BMR11267
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Nicholas Rego and David Koes
3Dmol.js: molecular visualization with WebGL
Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title:

Solution Structure of Human SUMO-2 (SMT3B), a Ubiquitin-like Protein

Deposition date:

2010-08-09

Original release date:

2011-08-18

Authors:

Zhao, C.; Saito, K.; Koshiba, S.; Inoue, M.; Kigawa, T.; Yokoyama, S.

Citation:

Citation: Zhao, C.; Saito, K.; Koshiba, S.; Inoue, M.; Kigawa, T.; Yokoyama, S.. "Solution Structure of Human SUMO-2 (SMT3B), a Ubiquitin-like Protein" .

Assembly members:

Assembly members:
ubiquitin-like molecule, polymer, 104 residues, Formula weight is not available

Natural source:

Natural source: Common Name: human Taxonomy ID: 9606 Superkingdom: Eukaryota Kingdom: Metazoa Genus/species: Homo sapiens

Experimental source:

Experimental source: Production method: cell free synthesis Host organism: E. coli - cell free Vector: P040510-09

Entity Sequences (FASTA):

Entity Sequences (FASTA):
ubiquitin-like molecule: GSSGSSGMADEKPKEGVKTE NNDHINLKVAGQDGSVVQFK IKRHTPLSKLMKAYCERQGL SMRQIRFRFDGQPINETDTP AQLEMEDEDTIDVFQQQTSG PSSG

Data sets:

assigned_chemical_shifts
- chemical_shift_1

Data type	Count
13C chemical shifts	399
15N chemical shifts	94
1H chemical shifts	635

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	ubiquitin-like molecule	1

Entities:

Entity 1, ubiquitin-like molecule 104 residues - Formula weight is not available

1

GLY

SER

GLY

SER

GLY

MET

ALA

ASP

2

GLU

LYS

PRO

LYS

GLU

GLY

VAL

LYS

THR

GLU

3

ASN

ASP

HIS

ILE

ASN

LEU

LYS

VAL

ALA

4

GLY

GLN

ASP

GLY

SER

VAL

GLN

PHE

LYS

5

ILE

LYS

ARG

HIS

THR

PRO

LEU

SER

LYS

LEU

6

MET

LYS

ALA

TYR

CYS

GLU

ARG

GLN

GLY

LEU

7

SER

MET

ARG

GLN

ILE

ARG

PHE

ARG

PHE

ASP

8

GLY

GLN

PRO

ILE

ASN

GLU

THR

ASP

THR

PRO

9

ALA

GLN

LEU

GLU

MET

GLU

ASP

GLU

ASP

THR

10

ILE

ASP

VAL

PHE

GLN

THR

SER

GLY

11

PRO

SER

GLY

Samples:

sample_1: ubiquitin-like molecule, [U-13C; U-15N], 1.21 mM; d-Tris-HCl 20 mM; NaCl 100 mM; d-DTT 1 mM; NaN3 0.02%; H2O 90%; D2O 10%

condition_1: ionic strength: 100 mM; pH: 7.0; pressure: 1 atm; temperature: 298.0 K

Experiments:

Name	Sample	Sample state	Sample conditions
3D 15N-separated NOESY	sample_1	isotropic	condition_1
3D 13C-separated NOESY	sample_1	isotropic	condition_1

Software:

xwinnmr v2.6, Bruker - collection

NMRPipe v20020425, Delaglio, F. - processing

NMRView v5.0.4, Johnson, B. A. - data analysis

Kujira v0.921, Kobayashi, N. - data analysis

CYANA v1.0.8, Guntert, P. - refinement, structure solution

NMR spectrometers:

Bruker AVANCE 800 MHz

BMRB	19961
PDB	1U4A 1WM2 1WM3 1WZ0 2AWT 2CKH 2D07 2IO0 2IO1 2IO3 2IYD 2MP2 2RPQ 3UIN 3UIO 3ZO5 4NPN 5D2M
DBJ	BAB28360 BAC39397 BAE21037 BAE35772 BAE39412
EMBL	CAA67897 CAG32064 CAL37097
GB	AAB49682 AAB92355 AAD45399 AAH08450 AAH16775
REF	NP_001003422 NP_001074186 NP_001185620 NP_001231073 NP_001239218
SP	P61955 P61956 P61957 P61958 P61959
TPG	DAA13334 DAA18189
AlphaFold	P61955 P61956 P61957 P61958 P61959