BMRB Entry 11262

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PDB ID: 1wx8
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_full, LACS
BMRB Entry DOI: doi:10.13018/BMR11262
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Nicholas Rego and David Koes
3Dmol.js: molecular visualization with WebGL
Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title:

Solution Structure of the N-terminal Ubiquitin-like Domain in the 4931431F19Rik Protein

Deposition date:

2010-08-09

Original release date:

2011-08-18

Authors:

Zhao, C.; Tomizawa, T.; Koshiba, S.; Inoue, M.; Kigawa, T.; Yokoyama, S.

Citation:

Citation: Zhao, C.; Tomizawa, T.; Koshiba, S.; Inoue, M.; Kigawa, T.; Yokoyama, S.. "Solution Structure of the N-terminal Ubiquitin-like Domain in the 4931431F19Rik Protein" .

Assembly members:

Assembly members:
ubiquitin-like domain, polymer, 96 residues, Formula weight is not available

Natural source:

Natural source: Common Name: house mouse Taxonomy ID: 10090 Superkingdom: Eukaryota Kingdom: Metazoa Genus/species: Mus musculus

Experimental source:

Experimental source: Production method: cell free synthesis Host organism: E. coli - cell free Vector: P040705-07

Entity Sequences (FASTA):

Entity Sequences (FASTA):
ubiquitin-like domain: GSSGSSGVSGREPSSRIIRV SVKTPQDCHEFFLAENSNVR RFKKQISKYLHCNADRLVLI FTGKILRDQDILSQRGILDG STVHVVVRSHSGPSSG

Data sets:

assigned_chemical_shifts
- chemical_shift_1

Data type	Count
13C chemical shifts	373
15N chemical shifts	85
1H chemical shifts	600

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	ubiquitin-like domain	1

Entities:

Entity 1, ubiquitin-like domain 96 residues - Formula weight is not available

1

GLY

SER

GLY

SER

GLY

VAL

SER

GLY

2

ARG

GLU

PRO

SER

ARG

ILE

ARG

VAL

3

SER

VAL

LYS

THR

PRO

GLN

ASP

CYS

HIS

GLU

4

PHE

LEU

ALA

GLU

ASN

SER

ASN

VAL

ARG

5

ARG

PHE

LYS

GLN

ILE

SER

LYS

TYR

LEU

6

HIS

CYS

ASN

ALA

ASP

ARG

LEU

VAL

LEU

ILE

7

PHE

THR

GLY

LYS

ILE

LEU

ARG

ASP

GLN

ASP

8

ILE

LEU

SER

GLN

ARG

GLY

ILE

LEU

ASP

GLY

9

SER

THR

VAL

HIS

VAL

ARG

SER

HIS

10

SER

GLY

PRO

SER

GLY

Samples:

sample_1: ubiquitin-like domain, [U-13C; U-15N], 1.51 mM; d-Tris-HCl 20 mM; NaCl 100 mM; d-DTT 1 mM; NaN3 0.02%; H2O 90%; D2O 10%

condition_1: ionic strength: 100 mM; pH: 7.0; pressure: 1 atm; temperature: 298.0 K

Experiments:

Name	Sample	Sample state	Sample conditions
3D 15N-separated NOESY	sample_1	isotropic	condition_1
3D 13C-separated NOESY	sample_1	isotropic	condition_1

Software:

xwinnmr v2.6, Bruker - collection

NMRPipe v20020425, Delaglio, F. - processing

NMRView v5.0.4, Johnson, B. A. - data analysis

Kujira v0.921, Kobayashi, N. - data analysis

CYANA v1.0.8, Guntert, P. - refinement, structure solution

NMR spectrometers:

Bruker AVANCE 800 MHz

PDB	1WX8
DBJ	BAB30272
GB	EDL16710
REF	NP_081910