BMRB Entry 11244

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PDB ID: 2eqr
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_anomalous, AVS_full, LACS
BMRB Entry DOI: doi:10.13018/BMR11244
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Nicholas Rego and David Koes
3Dmol.js: molecular visualization with WebGL
Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title:

Solution structure of the first SANT domain from human nuclear receptor corepressor 1

Deposition date:

2010-07-23

Original release date:

2011-08-03

Authors:

Zhang, H.; Hayahsi, F.; Yokoyama, S.

Citation:

Citation: Zhang, H.; Hayashi, F.; Yokoyama, S.. "Solution structure of the first SANT domain from human nuclear receptor corepressor 1" .

Assembly members:

Assembly members:
Sant domain, polymer, 61 residues, Formula weight is not available

Natural source:

Natural source: Common Name: human Taxonomy ID: 9606 Superkingdom: Eukaryota Kingdom: Metazoa Genus/species: Homo sapiens

Experimental source:

Experimental source: Production method: cell free synthesis Host organism: E. coli - cell free Vector: P061225-49

Entity Sequences (FASTA):

Entity Sequences (FASTA):
Sant domain: GSSGSSGDRQFMNVWTDHEK EIFKDKFIQHPKNFGLIASY LERKSVPDCVLYYYLTKKNE N

Data sets:

assigned_chemical_shifts
- chemical_shift_1

Data type	Count
13C chemical shifts	273
15N chemical shifts	59
1H chemical shifts	416

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	Sant domain	1

Entities:

Entity 1, Sant domain 61 residues - Formula weight is not available

1

GLY

SER

GLY

SER

GLY

ASP

ARG

GLN

2

PHE

MET

ASN

VAL

TRP

THR

ASP

HIS

GLU

LYS

3

GLU

ILE

PHE

LYS

ASP

LYS

PHE

ILE

GLN

HIS

4

PRO

LYS

ASN

PHE

GLY

LEU

ILE

ALA

SER

TYR

5

LEU

GLU

ARG

LYS

SER

VAL

PRO

ASP

CYS

VAL

6

LEU

TYR

LEU

THR

LYS

ASN

GLU

7

ASN

Samples:

sample_1: Sant domain, [U-13C; U-15N], 1.14 mM; d-Tris-HCl 20 mM; NaCl 100 mM; d-DTT 1 mM; NaN3 0.02%; H2O 90%; D2O 10%

condition_1: ionic strength: 120 mM; pH: 7.0; pressure: 1 atm; temperature: 293 K

Experiments:

Name	Sample	Sample state	Sample conditions
3D 13C-separated NOESY	sample_1	isotropic	condition_1
3D 15N-separated NOESY	sample_1	isotropic	condition_1

Software:

VNMR v6.1C, Varian - collection

NMRPipe v20031121, Delaglio, F. - processing

NMRView v5.0.4, Johnson, B.A. - data analysis

Kujira v0.9818, Kobayashi, N. - data analysis

CYANA v2.0.17, Guntert, P. - refinement, structure solution

NMR spectrometers:

Varian INOVA 800 MHz

PDB	2EQR
GB	AAH26028 AAH26623 AAH29627 AAH50594 AAH56862
REF	NP_001177367 NP_001258032 XP_003912439 XP_004042267 XP_004376019