BMRB Entry 11239

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PDB ID: 2yrj
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_full, LACS
BMRB Entry DOI: doi:10.13018/BMR11239
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Nicholas Rego and David Koes
3Dmol.js: molecular visualization with WebGL
Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title:

Solution structure of the C2H2-type zinc finger domain (781-813) from zinc finger protein 473

Deposition date:

2010-07-23

Original release date:

2011-08-03

Authors:

Qin, X.; Izumi, K.; Yoshida, M.; Hayashi, F.; Yokoyama, S.

Citation:

Citation: Qin, X.; Izumi, K.; Yoshida, M.; Hayashi, F.; Yokoyama, S.. "Solution structure of the C2H2-type zinc finger domain (781-813) from zinc finger protein 473" .

Assembly members:

Assembly members:
C2H2-type zinc finger, polymer, 46 residues, Formula weight is not available
ZN, non-polymer, 65.409 Da.

Natural source:

Natural source: Common Name: human Taxonomy ID: 9606 Superkingdom: Eukaryota Kingdom: Metazoa Genus/species: Homo sapiens

Experimental source:

Experimental source: Production method: cell free synthesis Host organism: E. coli - cell free Vector: P070115-35

Entity Sequences (FASTA):

Entity Sequences (FASTA):
C2H2-type zinc finger: GSSGSSGTGEKPYRCGECGK AFAQKANLTQHQRIHTGEKP SGPSSG

Data sets:

assigned_chemical_shifts
- chemical_shift_1

Data type	Count
13C chemical shifts	162
15N chemical shifts	38
1H chemical shifts	247

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	C2H2-type zinc finger	1
2	ZINC ION	2

Entities:

Entity 1, C2H2-type zinc finger 46 residues - Formula weight is not available

1

GLY

SER

GLY

SER

GLY

THR

GLY

GLU

2

LYS

PRO

TYR

ARG

CYS

GLY

GLU

CYS

GLY

LYS

3

ALA

PHE

ALA

GLN

LYS

ALA

ASN

LEU

THR

GLN

4

HIS

GLN

ARG

ILE

HIS

THR

GLY

GLU

LYS

PRO

5

SER

GLY

PRO

SER

GLY

Entity 2, ZINC ION - Zn - 65.409 Da.

1

ZN

Samples:

sample_1: C2H2-type zinc finger, [U-13C; U-15N], 1.08 mM; d-Tris-HCl 20 mM; NaCl 100 mM; d-DTT 1 mM; NaN3 0.02%; ZnCl2 0.05 mM; IDA 1 mM; H2O 90%; D2O 10%

condition_1: ionic strength: 120 mM; pH: 7.0; pressure: 1 atm; temperature: 298 K

Experiments:

Name	Sample	Sample state	Sample conditions
3D 13C-separated NOESY	sample_1	isotropic	condition_1
3D 15N-separated NOESY	sample_1	isotropic	condition_1

Software:

Delta v4.3, JEOL - collection

NMRPipe v20030801, Delaglio, F. - processing

NMRView v5.0.4, Johnson, B.A. - data analysis

Kujira v0.9820, Kobayashi, N. - data analysis

CYANA v2.0.17, Guntert, P. - refinement, structure solution

NMR spectrometers:

JEOL ECA 800 MHz