BMRB Entry 11239

Title:
Solution structure of the C2H2-type zinc finger domain (781-813) from zinc finger protein 473
Deposition date:
2010-07-23
Original release date:
2011-08-03
Authors:
Qin, X.; Izumi, K.; Yoshida, M.; Hayashi, F.; Yokoyama, S.
Citation:

Citation: Qin, X.; Izumi, K.; Yoshida, M.; Hayashi, F.; Yokoyama, S.. "Solution structure of the C2H2-type zinc finger domain (781-813) from zinc finger protein 473"  .

Assembly members:

Assembly members:
C2H2-type zinc finger, polymer, 46 residues, Formula weight is not available
ZN, non-polymer, 65.409 Da.

Natural source:

Natural source:   Common Name: human   Taxonomy ID: 9606   Superkingdom: Eukaryota   Kingdom: Metazoa   Genus/species: Homo sapiens

Experimental source:

Experimental source:   Production method: cell free synthesis   Host organism: E. coli - cell free   Vector: P070115-35

Entity Sequences (FASTA):

Entity Sequences (FASTA):
C2H2-type zinc finger: GSSGSSGTGEKPYRCGECGK AFAQKANLTQHQRIHTGEKP SGPSSG

Data sets:
Data typeCount
13C chemical shifts162
15N chemical shifts38
1H chemical shifts247

Additional metadata:

  • Assembly
  • Samples and Experiments
  • Software
  • Spectrometers
  • Hide all

Assembly:

Entity Assembly IDEntity NameEntity ID
1C2H2-type zinc finger1
2ZINC ION2

Entities:

Entity 1, C2H2-type zinc finger 46 residues - Formula weight is not available

1   GLYSERSERGLYSERSERGLYTHRGLYGLU
2   LYSPROTYRARGCYSGLYGLUCYSGLYLYS
3   ALAPHEALAGLNLYSALAASNLEUTHRGLN
4   HISGLNARGILEHISTHRGLYGLULYSPRO
5   SERGLYPROSERSERGLY

Entity 2, ZINC ION - Zn - 65.409 Da.

1   ZN

Samples:

sample_1: C2H2-type zinc finger, [U-13C; U-15N], 1.08 mM; d-Tris-HCl 20 mM; NaCl 100 mM; d-DTT 1 mM; NaN3 0.02%; ZnCl2 0.05 mM; IDA 1 mM; H2O 90%; D2O 10%

condition_1: ionic strength: 120 mM; pH: 7.0; pressure: 1 atm; temperature: 298 K

Experiments:

NameSampleSample stateSample conditions
3D 13C-separated NOESYsample_1isotropiccondition_1
3D 15N-separated NOESYsample_1isotropiccondition_1

Software:

Delta v4.3, JEOL - collection

NMRPipe v20030801, Delaglio, F. - processing

NMRView v5.0.4, Johnson, B.A. - data analysis

Kujira v0.9820, Kobayashi, N. - data analysis

CYANA v2.0.17, Guntert, P. - refinement, structure solution

NMR spectrometers:

  • JEOL ECA 800 MHz

Related Database Links:

PDB

Download HSQC peak lists in one of the following formats:
CSV: Backbone or all simulated peaks
SPARKY: Backbone or all simulated peaks