BMRB Entry 11234

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PDB ID: 2ysl
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_full, LACS
BMRB Entry DOI: doi:10.13018/BMR11234
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Nicholas Rego and David Koes
3Dmol.js: molecular visualization with WebGL
Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title:

Solution structure of the RING domain (1-66) from tripartite motif-containing protein 31

Deposition date:

2010-07-23

Original release date:

2011-08-03

Authors:

Qin, X.; Nagashima, T.; Hayashi, F.; Yokoyama, S.

Citation:

Citation: Qin, X.; Nagashima, T.; Hayashi, F.; Yokoyama, S.. "Solution structure of the RING domain (1-66) from tripartite motif-containing protein 31" .

Assembly members:

Assembly members:
RING-type zinc finger, polymer, 73 residues, Formula weight is not available
ZN, non-polymer, 65.409 Da.

Natural source:

Natural source: Common Name: human Taxonomy ID: 9606 Superkingdom: Eukaryota Kingdom: Metazoa Genus/species: Homo sapiens

Experimental source:

Experimental source: Production method: cell free synthesis Host organism: E. coli - cell free Vector: P060529-14

Entity Sequences (FASTA):

Entity Sequences (FASTA):
RING-type zinc finger: GSSGSSGMASGQFVNKLQEE VICPICLDILQKPVTIDCGH NFCLKCITQIGETSCGFFKC PLCKTSVRKNAIR

Data sets:

assigned_chemical_shifts
- chemical_shift_1

Data type	Count
13C chemical shifts	299
15N chemical shifts	63
1H chemical shifts	484

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	RING-type zinc finger	1
2	ZINC ION no.1	2
3	ZINC ION no.2	2

Entities:

Entity 1, RING-type zinc finger 73 residues - Formula weight is not available

1

GLY

SER

GLY

SER

GLY

MET

ALA

SER

2

GLY

GLN

PHE

VAL

ASN

LYS

LEU

GLN

GLU

3

VAL

ILE

CYS

PRO

ILE

CYS

LEU

ASP

ILE

LEU

4

GLN

LYS

PRO

VAL

THR

ILE

ASP

CYS

GLY

HIS

5

ASN

PHE

CYS

LEU

LYS

CYS

ILE

THR

GLN

ILE

6

GLY

GLU

THR

SER

CYS

GLY

PHE

LYS

CYS

7

PRO

LEU

CYS

LYS

THR

SER

VAL

ARG

LYS

ASN

8

ALA

ILE

ARG

Entity 2, ZINC ION no.1 - Zn - 65.409 Da.

1

ZN

Samples:

sample_1: RING-type zinc finger, [U-13C; U-15N], 1.16 mM; d-Tris-HCl 20 mM; NaCl 100 mM; d-DTT 1 mM; NaN3 0.02%; ZnCl2 0.05 mM; IDA 1 mM; H2O 90%; D2O 10%

condition_1: ionic strength: 120 mM; pH: 7.0; pressure: 1 atm; temperature: 298 K

Experiments:

Name	Sample	Sample state	Sample conditions
3D 15N-separated NOESY	sample_1	isotropic	condition_1
3D 13C-separated NOESY	sample_1	isotropic	condition_1

Software:

VNMR v6.1C, Varian - collection

NMRPipe v20030801, Delaglio, F. - processing

NMRView v5.0.4, Johnson, B.A. - data analysis

Kujira v0.9820, Kobayashi, N. - data analysis

CYANA v2.0.17, Guntert, P. - refinement, structure solution

NMR spectrometers:

Varian INOVA 800 MHz

PDB	2YSJ 2YSL
DBJ	BAD96449 BAE78603 BAE92827 BAE92828 BAF82959
EMBL	CAM26290
GB	AAH17017 AAP35321 AAP36702 AAX41911 AAX41912
REF	NP_008959 XP_003272070 XP_004043605 XP_008953353 XP_008953354
SP	Q9BZY9
AlphaFold	Q9BZY9