BMRB Entry 11233

Name: Solution structure of the SH3 domain of human KIAA1783 protein
Published: 2011-08-03

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PDB ID: 2dlp
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_anomalous, AVS_full, LACS
BMRB Entry DOI: doi:10.13018/BMR11233
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Nicholas Rego and David Koes
3Dmol.js: molecular visualization with WebGL
Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title:

Solution structure of the SH3 domain of human KIAA1783 protein

Deposition date:

2010-07-23

Original release date:

2011-08-03

Authors:

Qin, X.; Kurosaki, C.; Yoshida, M.; Hayashi, F.; Yokoyama, S.

Citation:

Citation: Qin, X.; Kurosaki, C.; Yoshida, M.; Hayashi, F.; Yokoyama, S.. "Solution structure of the SH3 domain of human KIAA1783 protein" .

Assembly members:

Assembly members:
SH3 domain, polymer, 85 residues, Formula weight is not available

Natural source:

Natural source: Common Name: human Taxonomy ID: 9606 Superkingdom: Eukaryota Kingdom: Metazoa Genus/species: Homo sapiens

Experimental source:

Experimental source: Production method: cell free synthesis Host organism: E. coli - cell free Vector: P051101-05

Entity Sequences (FASTA):

Entity Sequences (FASTA):
SH3 domain: GSSGSSGSGYVIALRSYITD NCSLLSFHRGDLIKLLPVAT LEPGWQFGSAGGRSGLFPAD IVQPAAAPDFSFSKEQRSGS GPSSG

Data sets:

assigned_chemical_shifts
- chemical_shift_1

Data type	Count
13C chemical shifts	338
15N chemical shifts	74
1H chemical shifts	514

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	SH3 domain	1

Entities:

Entity 1, SH3 domain 85 residues - Formula weight is not available

1

GLY

SER

GLY

SER

GLY

SER

GLY

TYR

2

VAL

ILE

ALA

LEU

ARG

SER

TYR

ILE

THR

ASP

3

ASN

CYS

SER

LEU

SER

PHE

HIS

ARG

GLY

4

ASP

LEU

ILE

LYS

LEU

PRO

VAL

ALA

THR

5

LEU

GLU

PRO

GLY

TRP

GLN

PHE

GLY

SER

ALA

6

GLY

ARG

SER

GLY

LEU

PHE

PRO

ALA

ASP

7

ILE

VAL

GLN

PRO

ALA

PRO

ASP

PHE

8

SER

PHE

SER

LYS

GLU

GLN

ARG

SER

GLY

SER

9

GLY

PRO

SER

GLY

Samples:

sample_1: SH3 domain, [U-13C; U-15N], 1.15 mM; d-Tris-HCl 20 mM; NaCl 100 mM; d-DTT 1 mM; NaN3 0.02%; H2O 90%; D2O 10%

condition_1: ionic strength: 120 mM; pH: 7.0; pressure: 1 atm; temperature: 298 K

Experiments:

Name	Sample	Sample state	Sample conditions
3D 15N-separated NOESY	sample_1	isotropic	condition_1
3D 13C-separated NOESY	sample_1	isotropic	condition_1

Software:

Delta v4.3, JEOL - collection

NMRPipe v20031121, Delaglio, F. - processing

NMRView v5.0.4, Johnson, B.A - data analysis

Kujira v0.9296, Kobayashi, N. - data analysis

CYANA v2.0.17, Guntert, P. - refinement, structure solution

NMR spectrometers:

JEOL ECA 700 MHz

PDB	2DLP
DBJ	BAB47412 BAG10147
GB	EAW89288
REF	NP_001296171 XP_001095714 XP_002827884 XP_004041092 XP_009431703
SP	Q96JP2
AlphaFold	Q96JP2