BMRB Entry 11229

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PDB ID: 2e6p
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_full, LACS
BMRB Entry DOI: doi:10.13018/BMR11229
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Nicholas Rego and David Koes
3Dmol.js: molecular visualization with WebGL
Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title:

Solution structure of the Ig-like domain (714-804) from human Obscurin-like protein 1

Deposition date:

2010-07-23

Original release date:

2011-08-03

Authors:

Qin, X.; Suetake, T.; Hayashi, F.; Yokoyama, S.

Citation:

Citation: Qin, X.; Suetake, T.; Hayashi, F.; Yokoyama, S.. "Solution structure of the Ig-like domain (714-804) from human Obscurin-like protein 1" .

Assembly members:

Assembly members:
Ig-like domain, polymer, 104 residues, Formula weight is not available

Natural source:

Natural source: Common Name: human Taxonomy ID: 9606 Superkingdom: Eukaryota Kingdom: Metazoa Genus/species: Homo sapiens

Experimental source:

Experimental source: Production method: cell free synthesis Host organism: E. coli - cell free Vector: P050919-02

Entity Sequences (FASTA):

Entity Sequences (FASTA):
Ig-like domain: GSSGSSGPVHILSPQDKVSL TFTTSERVVLTCELSRVDFP ATWYKDGQKVEESELLVVKM DGRKHRLILPEAKVQDSGEF ECRTEGVSAFFGVTVQDPSG PSSG

Data sets:

assigned_chemical_shifts
- chemical_shift_1

Data type	Count
13C chemical shifts	442
15N chemical shifts	97
1H chemical shifts	687

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	Ig-like domain	1

Entities:

Entity 1, Ig-like domain 104 residues - Formula weight is not available

1

GLY

SER

GLY

SER

GLY

PRO

VAL

HIS

2

ILE

LEU

SER

PRO

GLN

ASP

LYS

VAL

SER

LEU

3

THR

PHE

THR

SER

GLU

ARG

VAL

LEU

4

THR

CYS

GLU

LEU

SER

ARG

VAL

ASP

PHE

PRO

5

ALA

THR

TRP

TYR

LYS

ASP

GLY

GLN

LYS

VAL

6

GLU

SER

GLU

LEU

VAL

LYS

MET

7

ASP

GLY

ARG

LYS

HIS

ARG

LEU

ILE

LEU

PRO

8

GLU

ALA

LYS

VAL

GLN

ASP

SER

GLY

GLU

PHE

9

GLU

CYS

ARG

THR

GLU

GLY

VAL

SER

ALA

PHE

10

PHE

GLY

VAL

THR

VAL

GLN

ASP

PRO

SER

GLY

11

PRO

SER

GLY

Samples:

sample_1: Ig-like domain, [U-13C; U-15N], 1.17 mM; d-Tris-HCl 20 mM; NaCl 100 mM; d-DTT 1 mM; NaN3 0.02%; H2O 90%; D2O 10%

condition_1: ionic strength: 120 mM; pH: 7.0; pressure: 1 atm; temperature: 298 K

Experiments:

Name	Sample	Sample state	Sample conditions
3D 15N-separated NOESY	sample_1	isotropic	condition_1
3D 13C-separated NOESY	sample_1	isotropic	condition_1

Software:

VNMR v6.1C, Varian - collection

NMRPipe v20031121, Delaglio, F. - processing

NMRView v5.0.4, Johnson, B.A. - data analysis

Kujira v0.9816, Kobayashi, N. - data analysis

CYANA v2.0.17, Guntert, P. - structure solution

NMR spectrometers:

Varian INOVA 800 MHz