BMRB Entry 11226

Title:
Solution structure of the PDZ domain from Human MAGUK p55 subfamily member 2
Deposition date:
2010-07-23
Original release date:
2011-08-03
Authors:
Qin, X.; Kurosaki, C.; Yoshida, M.; Hayashi, F.; Yokoyama, S.
Citation:

Citation: Qin, X.; Kurosaki, C.; Yoshida, M.; Hayashi, F.; Yokoyama, S.. "Solution structure of the PDZ domain from Human MAGUK p55 subfamily member 2"  .

Assembly members:

Assembly members:
PDZ domain, polymer, 91 residues, Formula weight is not available

Natural source:

Natural source:   Common Name: human   Taxonomy ID: 9606   Superkingdom: Eukaryota   Kingdom: Metazoa   Genus/species: Homo sapiens

Experimental source:   Production method: cell free synthesis   Host organism: E. coli - cell free   Vector: P050912-12

Experimental source:

Natural source:   Common Name: human   Taxonomy ID: 9606   Superkingdom: Eukaryota   Kingdom: Metazoa   Genus/species: Homo sapiens

Experimental source:   Production method: cell free synthesis   Host organism: E. coli - cell free   Vector: P050912-12

Entity Sequences (FASTA):

Data sets:
Data typeCount
13C chemical shifts365
15N chemical shifts87
1H chemical shifts603

Additional metadata:

  • Assembly
  • Samples and Experiments
  • Software
  • Spectrometers
  • Hide all

Assembly:

Entity Assembly IDEntity NameEntity ID
1PDZ domain1

Entities:

Entity 1, PDZ domain 91 residues - Formula weight is not available

1   GLYSERSERGLYSERSERGLYARGMETVAL
2   GLYILEARGLYSTHRALAGLYGLUHISLEU
3   GLYVALTHRPHEARGVALGLUGLYGLYGLU
4   LEUVALILEALAARGILELEUHISGLYGLY
5   METVALALAGLNGLNGLYLEULEUHISVAL
6   GLYASPILEILELYSGLUVALASNGLYGLN
7   PROVALGLYSERASPPROARGALALEUGLN
8   GLULEULEUARGASNALASERGLYSERVAL
9   ILELEULYSILELEUSERGLYPROSERSER
10   GLY

Samples:

sample_1: PDZ domain, [U-13C; U-15N], 1.14 mM; d-Tris-HCl 20 mM; NaCl 100 mM; d-DTT 1 mM; NaN3 0.02%; H2O 90%; D2O 10%

condition_1: ionic strength: 120 mM; pH: 7.0; pressure: 1 atm; temperature: 298 K

Experiments:

NameSampleSample stateSample conditions
3D 15N-separated NOESYsample_1isotropiccondition_1
3D 13C-separated NOESYsample_1isotropiccondition_1

Software:

Delta v4.3, JEOL - collection

NMRPipe v20031121, Delaglio, F. - processing

NMRView v5.0.4, Johnson, B.A. - data analysis

Kujira v0.9816, Kobayashi, N. - data analysis

CYANA v2.0.17, Guntert, P. - refinement, structure solution

NMR spectrometers:

  • JEOL ECA 800 MHz

Related Database Links:

PDB
DBJ BAD97280 BAE24680 BAE36473 BAE42909 BAG57760
EMBL CAA58067 CAB66489 CAI56746
GB AAC78484 AAD44342 AAH30287 AAH53026 AAX29754
REF NP_001180000 NP_001265299 NP_001265300 NP_001265301 NP_001265302
SP Q14168 Q9WV34
TPG DAA18383
AlphaFold Q9WV34

Download HSQC peak lists in one of the following formats:
CSV: Backbone or all simulated peaks
SPARKY: Backbone or all simulated peaks