BMRB Entry 11223

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PDB ID: 2dl9
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_full, LACS
BMRB Entry DOI: doi:10.13018/BMR11223
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Nicholas Rego and David Koes
3Dmol.js: molecular visualization with WebGL
Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title:

Solution structure of the Ig-like domain of human Leucine-rich repeat-containing protein 4

Deposition date:

2010-07-23

Original release date:

2011-08-03

Authors:

Qin, X.; Nagashima, T.; Hayashi, F.; Yokoyama, S.

Citation:

Citation: Qin, X.; Nagashima, T.; Hayashi, F.; Yokoyama, S.. "Solution structure of the Ig-like domain of human Leucine-rich repeat-containing protein 4" .

Assembly members:

Assembly members:
IG-like domain, polymer, 103 residues, Formula weight is not available

Natural source:

Natural source: Common Name: human Taxonomy ID: 9606 Superkingdom: Eukaryota Kingdom: Metazoa Genus/species: Homo sapiens

Experimental source:

Experimental source: Production method: cell free synthesis Host organism: E. coli - cell free Vector: P050719-19

Entity Sequences (FASTA):

Entity Sequences (FASTA):
IG-like domain: GSSGSSGPFIMDAPRDLNIS EGRMAELKCRTPPMSSVKWL LPNGTVLSHASRHPRISVLN DGTLNFSHVLLSDTGVYTCM VTNVAGNSNASAYLNVSSGP SSG

Data sets:

assigned_chemical_shifts
- chemical_shift_1

Data type	Count
13C chemical shifts	414
15N chemical shifts	96
1H chemical shifts	654

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	IG-like domain	1

Entities:

Entity 1, IG-like domain 103 residues - Formula weight is not available

1

GLY

SER

GLY

SER

GLY

PRO

PHE

ILE

2

MET

ASP

ALA

PRO

ARG

ASP

LEU

ASN

ILE

SER

3

GLU

GLY

ARG

MET

ALA

GLU

LEU

LYS

CYS

ARG

4

THR

PRO

MET

SER

VAL

LYS

TRP

LEU

5

LEU

PRO

ASN

GLY

THR

VAL

LEU

SER

HIS

ALA

6

SER

ARG

HIS

PRO

ARG

ILE

SER

VAL

LEU

ASN

7

ASP

GLY

THR

LEU

ASN

PHE

SER

HIS

VAL

LEU

8

LEU

SER

ASP

THR

GLY

VAL

TYR

THR

CYS

MET

9

VAL

THR

ASN

VAL

ALA

GLY

ASN

SER

ASN

ALA

10

SER

ALA

TYR

LEU

ASN

VAL

SER

GLY

PRO

11

SER

GLY

Samples:

sample_1: IG-like domain, [U-13C; U-15N], 1.26 mM; d-Tris-HCl 20 mM; NaCl 100 mM; d-DTT 1 mM; NaN3 0.02%; H2O 90%; D2O 10%

condition_1: ionic strength: 120 mM; pH: 7.0; pressure: 1 atm; temperature: 298 K

Experiments:

Name	Sample	Sample state	Sample conditions
3D 15N-separated NOESY	sample_1	isotropic	condition_1
3D 13C-separated NOESY	sample_1	isotropic	condition_1

Software:

VNMR v6.1C, Varian - collection

NMRPipe v20031121, Delaglio, F. - processing

NMRView v5.0.4, Johnson, B.A. - data analysis

Kujira v0.9296, Kobayashi N. - data analysis

CYANA v2.0.17, Guntert, P. - refinement, structure solution

NMR spectrometers:

Varian INOVA 800 MHz