BMRB Entry 11218

Name: Solution structure of the CIDE-N domain of human cell death activator CIDE-A
Published: 2011-07-21

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PDB ID: 2eel
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_full, LACS
BMRB Entry DOI: doi:10.13018/BMR11218
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Nicholas Rego and David Koes
3Dmol.js: molecular visualization with WebGL
Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title:

Solution structure of the CIDE-N domain of human cell death activator CIDE-A

Deposition date:

2010-07-22

Original release date:

2011-07-21

Authors:

Qin, X.; Nagashima, T.; Hayashi, F.; Yokoyama, S.

Citation:

Citation: Qin, X.; Nagashima, T.; Hayashi, F.; Yokoyama, S.. "Solution structure of the CIDE-N domain of human cell death activator CIDE-A" .

Assembly members:

Assembly members:
CIDE-N domain, polymer, 91 residues, Formula weight is not available

Natural source:

Natural source: Common Name: human Taxonomy ID: 9606 Superkingdom: Eukaryota Kingdom: Metazoa Genus/species: Homo sapiens

Experimental source:

Experimental source: Production method: cell free synthesis Host organism: E. coli - cell free Vector: P050613-03

Entity Sequences (FASTA):

Entity Sequences (FASTA):
CIDE-N domain: GSSGSSGPARPFRVSNHDRS SRRGVMASSLQELISKTLDA LVIATGLVTLVLEEDGTVVD TEEFFQTLGDNTHFMILEKG QKWMPSGPSSG

Data sets:

assigned_chemical_shifts
- chemical_shift_1

Data type	Count
13C chemical shifts	383
15N chemical shifts	89
1H chemical shifts	597

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	CIDE-N domain of human cell death activator CIDE-A	1

Entities:

Entity 1, CIDE-N domain of human cell death activator CIDE-A 91 residues - Formula weight is not available

1

GLY

SER

GLY

SER

GLY

PRO

ALA

ARG

2

PRO

PHE

ARG

VAL

SER

ASN

HIS

ASP

ARG

SER

3

SER

ARG

GLY

VAL

MET

ALA

SER

LEU

4

GLN

GLU

LEU

ILE

SER

LYS

THR

LEU

ASP

ALA

5

LEU

VAL

ILE

ALA

THR

GLY

LEU

VAL

THR

LEU

6

VAL

LEU

GLU

ASP

GLY

THR

VAL

ASP

7

THR

GLU

PHE

GLN

THR

LEU

GLY

ASP

8

ASN

THR

HIS

PHE

MET

ILE

LEU

GLU

LYS

GLY

9

GLN

LYS

TRP

MET

PRO

SER

GLY

PRO

SER

10

GLY

Samples:

sample_1: CIDE-N domain, [U-13C; U-15N], 1.10 mM; d-Tris-HCl 20 mM; NaCl 100 mM; d-DTT 1 mM; NaN3 0.02%; H2O 90%; D2O 10%

condition_1: ionic strength: 120 mM; pH: 7.0; pressure: 1 atm; temperature: 298 K

Experiments:

Name	Sample	Sample state	Sample conditions
3D 15N-separated NOESY	sample_1	isotropic	condition_1
3D 13C-separated NOESY	sample_1	isotropic	condition_1

Software:

VNMR v6.1C, Varian - collection

NMRPipe v20031121, Delaglio, F. - processing

NMRView v5.0.4, Johnson, B.A. - data analysis

Kujira v0.9816, Kobayashi, N. - data analysis

CYANA v2.0.17, Guntert, P. - refinement, structure solution

NMR spectrometers:

Varian INOVA 800 MHz

PDB	2EEL
GB	AAC34987 AAH31896 AAQ65241 ACA05965 ACA05966
REF	NP_001270 XP_001094509 XP_002757072 XP_002828066 XP_003817916
SP	O60543
AlphaFold	O60543