BMRB Entry 11207

Name: Solution structure of the first PDZ domain of scribble homolog protein (hScrib)
Published: 2011-07-21

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PDB ID: 1x5q
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_full, LACS
BMRB Entry DOI: doi:10.13018/BMR11207
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Nicholas Rego and David Koes
3Dmol.js: molecular visualization with WebGL
Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title:

Solution structure of the first PDZ domain of scribble homolog protein (hScrib)

Deposition date:

2010-07-22

Original release date:

2011-07-21

Authors:

Qin, X.; Nagashima, T.; Hayashi, F.; Yokoyama, S.

Citation:

Citation: Qin, X.; Nagashima, T.; Hayashi, F.; Yokoyama, S.. "Solution structure of the first PDZ domain of scribble homolog protein (hScrib)" .

Assembly members:

Assembly members:
PDZ domain, polymer, 110 residues, Formula weight is not available

Natural source:

Natural source: Common Name: human Taxonomy ID: 9606 Superkingdom: Eukaryota Kingdom: Metazoa Genus/species: Homo sapiens

Experimental source:

Experimental source: Production method: cell free synthesis Host organism: E. coli - cell free Vector: P040628-05

Entity Sequences (FASTA):

Entity Sequences (FASTA):
PDZ domain: GSSGSSGEPARIEEEELTLT ILRQTGGLGISIAGGKGSTP YKGDDEGIFISRVSEEGPAA RAGVRVGDKLLEVNGVALQG AEHHEAVEALRGAGTAVQMR VWRESGPSSG

Data sets:

assigned_chemical_shifts
- chemical_shift_1

Data type	Count
13C chemical shifts	431
15N chemical shifts	105
1H chemical shifts	686

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	PDZ domain of scribble homolog protein (hScrib)	1

Entities:

Entity 1, PDZ domain of scribble homolog protein (hScrib) 110 residues - Formula weight is not available

1	GLY	SER	SER	GLY	SER	SER	GLY	GLU	PRO	ALA
2	ARG	ILE	GLU	GLU	GLU	GLU	LEU	THR	LEU	THR
3	ILE	LEU	ARG	GLN	THR	GLY	GLY	LEU	GLY	ILE
4	SER	ILE	ALA	GLY	GLY	LYS	GLY	SER	THR	PRO
5	TYR	LYS	GLY	ASP	ASP	GLU	GLY	ILE	PHE	ILE
6	SER	ARG	VAL	SER	GLU	GLU	GLY	PRO	ALA	ALA
7	ARG	ALA	GLY	VAL	ARG	VAL	GLY	ASP	LYS	LEU
8	LEU	GLU	VAL	ASN	GLY	VAL	ALA	LEU	GLN	GLY
9	ALA	GLU	HIS	HIS	GLU	ALA	VAL	GLU	ALA	LEU
10	ARG	GLY	ALA	GLY	THR	ALA	VAL	GLN	MET	ARG
11	VAL	TRP	ARG	GLU	SER	GLY	PRO	SER	SER	GLY

Samples:

sample_1: PDZ domain, [U-13C; U-15N], 1.20 mM; d-Tris-HCl 20 mM; NaCl 100 mM; d-DTT 1 mM; NaN3 0.02%; H2O 90%; D2O 10%

condition_1: ionic strength: 120 mM; pH: 7.0; pressure: 1 atm; temperature: 298 K

Experiments:

Name	Sample	Sample state	Sample conditions
3D 15N-separated NOESY	sample_1	isotropic	condition_1
3D 13C-separated NOESY	sample_1	isotropic	condition_1

Software:

VNMR v6.1C, Varian - collection

NMRPipe v20031121, DelaglioF. - processing

NMRView v5.0.4, JohnsonB.A. - data analysis

Kujira v0.9296, KobayashiN. - data analysis

CYANA v1.0.7, GuntertP. - refinement, structure solution

NMR spectrometers:

Varian INOVA 800 MHz
Varian INOVA 900 MHz

PDB	1X5Q 2W4F
REF	XP_014394174

1	GLY	SER	SER	GLY	SER	SER	GLY	GLU	PRO	ALA
2	ARG	ILE	GLU	GLU	GLU	GLU	LEU	THR	LEU	THR
3	ILE	LEU	ARG	GLN	THR	GLY	GLY	LEU	GLY	ILE
4	SER	ILE	ALA	GLY	GLY	LYS	GLY	SER	THR	PRO
5	TYR	LYS	GLY	ASP	ASP	GLU	GLY	ILE	PHE	ILE
6	SER	ARG	VAL	SER	GLU	GLU	GLY	PRO	ALA	ALA
7	ARG	ALA	GLY	VAL	ARG	VAL	GLY	ASP	LYS	LEU
8	LEU	GLU	VAL	ASN	GLY	VAL	ALA	LEU	GLN	GLY
9	ALA	GLU	HIS	HIS	GLU	ALA	VAL	GLU	ALA	LEU
10	ARG	GLY	ALA	GLY	THR	ALA	VAL	GLN	MET	ARG
11	VAL	TRP	ARG	GLU	SER	GLY	PRO	SER	SER	GLY

1	GLY	SER	SER	GLY	SER	SER	GLY	GLU	PRO	ALA
2	ARG	ILE	GLU	GLU	GLU	GLU	LEU	THR	LEU	THR
3	ILE	LEU	ARG	GLN	THR	GLY	GLY	LEU	GLY	ILE
4	SER	ILE	ALA	GLY	GLY	LYS	GLY	SER	THR	PRO
5	TYR	LYS	GLY	ASP	ASP	GLU	GLY	ILE	PHE	ILE
6	SER	ARG	VAL	SER	GLU	GLU	GLY	PRO	ALA	ALA
7	ARG	ALA	GLY	VAL	ARG	VAL	GLY	ASP	LYS	LEU
8	LEU	GLU	VAL	ASN	GLY	VAL	ALA	LEU	GLN	GLY
9	ALA	GLU	HIS	HIS	GLU	ALA	VAL	GLU	ALA	LEU
10	ARG	GLY	ALA	GLY	THR	ALA	VAL	GLN	MET	ARG
11	VAL	TRP	ARG	GLU	SER	GLY	PRO	SER	SER	GLY