BMRB Entry 11194

Name: Solution structure of the fifth SH3 domain from human KIAA0418 protein
Published: 2011-07-20

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PDB ID: 2egc
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_anomalous, AVS_full, LACS
BMRB Entry DOI: doi:10.13018/BMR11194
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Nicholas Rego and David Koes
3Dmol.js: molecular visualization with WebGL
Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title:

Solution structure of the fifth SH3 domain from human KIAA0418 protein

Deposition date:

2010-07-21

Original release date:

2011-07-20

Authors:

Inoue, K.; Kurosaki, C.; Yoshida, M.; Hayashi, F.; Yokoyama, S.

Citation:

Citation: Inoue, K.; Kurosaki, C.; Yoshida, M.; Hayashi, F.; Yokoyama, S.. "Solution structure of the fifth SH3 domain from human KIAA0418 protein" .

Assembly members:

Assembly members:
SH3 domain, polymer, 75 residues, Formula weight is not available

Natural source:

Natural source: Common Name: human Taxonomy ID: 9606 Superkingdom: Eukaryota Kingdom: Metazoa Genus/species: Homo sapiens

Experimental source:

Experimental source: Production method: cell free synthesis Host organism: E. coli - cell free Vector: P050919-09

Entity Sequences (FASTA):

Entity Sequences (FASTA):
SH3 domain: GSSGSSGNLKDVYVSIADYE GDEETAGFQEGVSMEVLERN PNGWWYCQILDGVKPFKGWV PSNYLEKKNSGPSSG

Data sets:

assigned_chemical_shifts
- chemical_shift_1

Data type	Count
13C chemical shifts	294
15N chemical shifts	70
1H chemical shifts	455

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	SH3 domain	1

Entities:

Entity 1, SH3 domain 75 residues - Formula weight is not available

1

GLY

SER

GLY

SER

GLY

ASN

LEU

LYS

2

ASP

VAL

TYR

VAL

SER

ILE

ALA

ASP

TYR

GLU

3

GLY

ASP

GLU

THR

ALA

GLY

PHE

GLN

GLU

4

GLY

VAL

SER

MET

GLU

VAL

LEU

GLU

ARG

ASN

5

PRO

ASN

GLY

TRP

TYR

CYS

GLN

ILE

LEU

6

ASP

GLY

VAL

LYS

PRO

PHE

LYS

GLY

TRP

VAL

7

PRO

SER

ASN

TYR

LEU

GLU

LYS

ASN

SER

8

GLY

PRO

SER

GLY

Samples:

sample_1: SH3 domain, [U-13C; U-15N], 1.18 mM; d-Tris-HCl 20 mM; NaCl 100 mM; d-DTT 1 mM; NaN3 0.02%; H2O 90%; D2O 10%

condition_1: ionic strength: 120 mM; pH: 7.0; pressure: 1 atm; temperature: 298 K

Experiments:

Name	Sample	Sample state	Sample conditions
3D 15N-separated NOESY	sample_1	isotropic	condition_1
3D 13C-separated NOESY	sample_1	isotropic	condition_1

Software:

Delta NMR v4.3.2, JEOL - collection

NMRPipe v20060324, Delaglio, F. - processing

NMRView v5.0.4, Johnson, B.A. - data analysis

Kujira v0.9807, Kobayashi, N. - data analysis

CYANA v2.1, Guntert, P. - refinement, structure solution

NMR spectrometers:

JEOL ECA 800 MHz