BMRB Entry 11190

Name: Solution structure of the third PDZ domain of human InaD-like protein
Published: 2011-07-20

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PDB ID: 2dmz
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_full, LACS
BMRB Entry DOI: doi:10.13018/BMR11190
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Nicholas Rego and David Koes
3Dmol.js: molecular visualization with WebGL
Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title:

Solution structure of the third PDZ domain of human InaD-like protein

Deposition date:

2010-07-21

Original release date:

2011-07-20

Authors:

Inoue, K.; Nagashima, T.; Hayashi, F.; Yokoyama, S.

Citation:

Citation: Inoue, K.; Nagashima, T.; Hayashi, F.; Yokoyama, S.. "Solution structure of the third PDZ domain of human InaD-like protein" .

Assembly members:

Assembly members:
PDZ domain, polymer, 129 residues, Formula weight is not available

Natural source:

Natural source: Common Name: human Taxonomy ID: 9606 Superkingdom: Eukaryota Kingdom: Metazoa Genus/species: Homo sapiens

Experimental source:

Experimental source: Production method: cell free synthesis Host organism: E. coli - cell free Vector: P050627-17

Entity Sequences (FASTA):

Entity Sequences (FASTA):
PDZ domain: GSSGSSGGSDSSLFETYNVE LVRKDGQSLGIRIVGYVGTS HTGEASGIYVKSVIPGSAAY HNGHIQVNDKIVAVDGVNIQ GFANHDVVEVLRNAGQVVHL TLVRRKTSSSTSPLEPPSDR GTVSGPSSG

Data sets:

assigned_chemical_shifts
- chemical_shift_1

Data type	Count
13C chemical shifts	509
15N chemical shifts	123
1H chemical shifts	812

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	PDZ domain	1

Entities:

Entity 1, PDZ domain 129 residues - Formula weight is not available

1

GLY

SER

GLY

SER

GLY

SER

ASP

2

SER

LEU

PHE

GLU

THR

TYR

ASN

VAL

GLU

3

LEU

VAL

ARG

LYS

ASP

GLY

GLN

SER

LEU

GLY

4

ILE

ARG

ILE

VAL

GLY

TYR

VAL

GLY

THR

SER

5

HIS

THR

GLY

GLU

ALA

SER

GLY

ILE

TYR

VAL

6

LYS

SER

VAL

ILE

PRO

GLY

SER

ALA

TYR

7

HIS

ASN

GLY

HIS

ILE

GLN

VAL

ASN

ASP

LYS

8

ILE

VAL

ALA

VAL

ASP

GLY

VAL

ASN

ILE

GLN

9

GLY

PHE

ALA

ASN

HIS

ASP

VAL

GLU

VAL

10

LEU

ARG

ASN

ALA

GLY

GLN

VAL

HIS

LEU

11

THR

LEU

VAL

ARG

LYS

THR

SER

12

THR

SER

PRO

LEU

GLU

PRO

SER

ASP

ARG

13

GLY

THR

VAL

SER

GLY

PRO

SER

GLY

Samples:

sample_1: PDZ domain, [U-13C; U-15N], 1.26 mM; d-Tris-HCl 20 mM; NaCl 100 mM; d-DTT 1 mM; NaN3 0.02%; H2O 90%; D2O 10%

condition_1: ionic strength: 120 mM; pH: 7.0; pressure: 1 atm; temperature: 293 K

Experiments:

Name	Sample	Sample state	Sample conditions
3D 15N-separated NOESY	sample_1	isotropic	condition_1
3D 13C-separated NOESY	sample_1	isotropic	condition_1

Software:

VNMR v6.1C, Varian - collection

NMRPipe v20031121, Delaglio, F. - processing

NMRView v5.0.4, Johnson, B.A. - data analysis

Kujira v0.93191, Kobayashi, N. - data analysis

CYANA v2.0.17, Guntert, P. - refinement, structure solution

NMR spectrometers:

Varian INOVA 800 MHz
Varian INOVA 900 MHz