BMRB Entry 11189

Name: Solution structure of the second PDZ domain of human InaD-like protein
Published: 2011-07-20

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PDB ID: 2dlu
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_full, LACS
BMRB Entry DOI: doi:10.13018/BMR11189
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Nicholas Rego and David Koes
3Dmol.js: molecular visualization with WebGL
Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title:

Solution structure of the second PDZ domain of human InaD-like protein

Deposition date:

2010-07-21

Original release date:

2011-07-20

Authors:

Inoue, K.; Kurosaki, C.; Izumi, K.; Yoshida, M.; Hayashi, F.; Yokoyama, S.

Citation:

Citation: Inoue, K.; Kurosaki, C.; Izumi, K.; Yoshida, M.; Hayashi, F.; Yokoyama, S.. "Solution structure of the second PDZ domain of human InaD-like protein" .

Assembly members:

Assembly members:
PDZ domain, polymer, 111 residues, Formula weight is not available

Natural source:

Natural source: Common Name: human Taxonomy ID: 9606 Superkingdom: Eukaryota Kingdom: Metazoa Genus/species: Homo sapiens

Experimental source:

Experimental source: Production method: cell free synthesis Host organism: E. coli - cell free Vector: P050627-16

Entity Sequences (FASTA):

Entity Sequences (FASTA):
PDZ domain: GSSGSSGPETVCWGHVEEVE LINDGSGLGFGIVGGKTSGV VVRTIVPGGLADRDGRLQTG DHILKIGGTNVQGMTSEQVA QVLRNCGNSVRMLVARDPAG DISVTSGPSSG

Data sets:

assigned_chemical_shifts
- chemical_shift_1

Data type	Count
13C chemical shifts	416
15N chemical shifts	106
1H chemical shifts	673

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	PDZ domain	1

Entities:

Entity 1, PDZ domain 111 residues - Formula weight is not available

1

GLY

SER

GLY

SER

GLY

PRO

GLU

THR

2

VAL

CYS

TRP

GLY

HIS

VAL

GLU

VAL

GLU

3

LEU

ILE

ASN

ASP

GLY

SER

GLY

LEU

GLY

PHE

4

GLY

ILE

VAL

GLY

LYS

THR

SER

GLY

VAL

5

VAL

ARG

THR

ILE

VAL

PRO

GLY

LEU

6

ALA

ASP

ARG

ASP

GLY

ARG

LEU

GLN

THR

GLY

7

ASP

HIS

ILE

LEU

LYS

ILE

GLY

THR

ASN

8

VAL

GLN

GLY

MET

THR

SER

GLU

GLN

VAL

ALA

9

GLN

VAL

LEU

ARG

ASN

CYS

GLY

ASN

SER

VAL

10

ARG

MET

LEU

VAL

ALA

ARG

ASP

PRO

ALA

GLY

11

ASP

ILE

SER

VAL

THR

SER

GLY

PRO

SER

12

GLY

Samples:

sample_1: PDZ domain, [U-13C; U-15N], 1.11 mM; d-Tris-HCl 20 mM; NaCl 100 mM; d-DTT 1 mM; NaN3 0.02%; H2O 90%; D2O 10%

condition_1: ionic strength: 120 mM; pH: 7.0; pressure: 1 atm; temperature: 298 K

Experiments:

Name	Sample	Sample state	Sample conditions
3D 15N-separated NOESY	sample_1	isotropic	condition_1
3D 13C-separated NOESY	sample_1	isotropic	condition_1

Software:

Delta NMR v4.3.2, JEOL - collection

NMRPipe v20031121, Delaglio, F. - processing

NMRView v5.0.4, Johnson, B.A. - data analysis

Kujira v0.93191, Kobayashi, N. - data analysis

CYANA v2.0.17, Guntert, P. - refinement, structure solution

NMR spectrometers:

JEOL ECA 800 MHz