BMRB Entry 11188

Name: Solution structure of the first PDZ domain of InaD-like protein
Published: 2011-07-20

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PDB ID: 2db5
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_full, LACS
BMRB Entry DOI: doi:10.13018/BMR11188
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Nicholas Rego and David Koes
3Dmol.js: molecular visualization with WebGL
Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title:

Solution structure of the first PDZ domain of InaD-like protein

Deposition date:

2010-07-21

Original release date:

2011-07-20

Authors:

Inoue, K.; Kurosaki, C.; Hayashi, F.; Yokoyama, S.

Citation:

Citation: Inoue, K.; Kurosaki, C.; Hayashi, F.; Yokoyama, S.. "Solution structure of the first PDZ domain of InaD-like protein" .

Assembly members:

Assembly members:
PDZ domain, polymer, 128 residues, Formula weight is not available

Natural source:

Natural source: Common Name: human Taxonomy ID: 9606 Superkingdom: Eukaryota Kingdom: Metazoa Genus/species: Homo sapiens

Experimental source:

Experimental source: Production method: cell free synthesis Host organism: E. coli - cell free Vector: P050302-62

Entity Sequences (FASTA):

Entity Sequences (FASTA):
PDZ domain: GSSGSSGLGNEDFNSVIQQM AQGRQIEYIDIERPSTGGLG FSVVALRSQNLGKVDIFVKD VQPGSVADRDQRLKENDQIL AINHTPLDQNISHQQAIALL QQTTGSLRLIVAREPVHTKS STSGPSSG

Data sets:

assigned_chemical_shifts
- chemical_shift_1

Data type	Count
13C chemical shifts	502
15N chemical shifts	128
1H chemical shifts	838

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	PDZ domain	1

Entities:

Entity 1, PDZ domain 128 residues - Formula weight is not available

1

GLY

SER

GLY

SER

GLY

LEU

GLY

ASN

2

GLU

ASP

PHE

ASN

SER

VAL

ILE

GLN

MET

3

ALA

GLN

GLY

ARG

GLN

ILE

GLU

TYR

ILE

ASP

4

ILE

GLU

ARG

PRO

SER

THR

GLY

LEU

GLY

5

PHE

SER

VAL

ALA

LEU

ARG

SER

GLN

ASN

6

LEU

GLY

LYS

VAL

ASP

ILE

PHE

VAL

LYS

ASP

7

VAL

GLN

PRO

GLY

SER

VAL

ALA

ASP

ARG

ASP

8

GLN

ARG

LEU

LYS

GLU

ASN

ASP

GLN

ILE

LEU

9

ALA

ILE

ASN

HIS

THR

PRO

LEU

ASP

GLN

ASN

10

ILE

SER

HIS

GLN

ALA

ILE

ALA

LEU

11

GLN

THR

GLY

SER

LEU

ARG

LEU

ILE

12

VAL

ALA

ARG

GLU

PRO

VAL

HIS

THR

LYS

SER

13

SER

THR

SER

GLY

PRO

SER

GLY

Samples:

sample_1: PDZ domain, [U-13C; U-15N], 1.37 mM; d-Tris-HCl 20 mM; NaCl 100 mM; d-DTT 1 mM; NaN3 0.02%; H2O 90%; D2O 10%

condition_1: ionic strength: 120 mM; pH: 7.0; pressure: 1 atm; temperature: 298 K

Experiments:

Name	Sample	Sample state	Sample conditions
3D 15N-separated NOESY	sample_1	isotropic	condition_1
3D 13C-separated NOESY	sample_1	isotropic	condition_1

Software:

VNMR v6.1C, Varian - collection

NMRPipe v20031121, Delaglio, F. - processing

NMRView v5.0.4, Johnson, B.A. - data analysis

Kujira v0.93191, Kobayashi, N. - data analysis

CYANA v2.0.17, Guntert, P. - refinement, structure solution

NMR spectrometers:

Varian INOVA 800 MHz