BMRB Entry 11121

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PDB ID: 1x5g
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_anomalous, AVS_full, LACS
BMRB Entry DOI: doi:10.13018/BMR11121
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Nicholas Rego and David Koes
3Dmol.js: molecular visualization with WebGL
Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title:

The solution structure of the second fibronectin type III domain of human Neogenin

Deposition date:

2010-03-31

Original release date:

2011-04-01

Authors:

Tochio, N.; Koshiba, S.; Inoue, M.; Kigawa, T.; Yokoyama, S.

Citation:

Citation: Tochio, N.; Koshiba, S.; Inoue, M.; Kigawa, T.; Yokoyama, S.. "The solution structure of the second fibronectin type III domain of human Neogenin" .

Assembly members:

Assembly members:
fn3 domain, polymer, 116 residues, Formula weight is not available

Natural source:

Natural source: Common Name: human Taxonomy ID: 9606 Superkingdom: Eukaryota Kingdom: Metazoa Genus/species: Homo sapiens

Experimental source:

Experimental source: Production method: cell free synthesis Host organism: E. coli - cell free Vector: P041213-03

Entity Sequences (FASTA):

Entity Sequences (FASTA):
fn3 domain: GSSGSSGRVETQPEVQLPGP APNLRAYAASPTSITVTWET PVSGNGEIQNYKLYYMEKGT DKEQDVDVSSHSYTINGLKK YTEYSFRVVAYNKHGPGVST PDVAVRTLSDSGPSSG

Data sets:

assigned_chemical_shifts
- chemical_shift_1

Data type	Count
13C chemical shifts	463
15N chemical shifts	108
1H chemical shifts	706

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	fn3 domain	1

Entities:

Entity 1, fn3 domain 116 residues - Formula weight is not available

1

GLY

SER

GLY

SER

GLY

ARG

VAL

GLU

2

THR

GLN

PRO

GLU

VAL

GLN

LEU

PRO

GLY

PRO

3

ALA

PRO

ASN

LEU

ARG

ALA

TYR

ALA

SER

4

PRO

THR

SER

ILE

THR

VAL

THR

TRP

GLU

THR

5

PRO

VAL

SER

GLY

ASN

GLY

GLU

ILE

GLN

ASN

6

TYR

LYS

LEU

TYR

MET

GLU

LYS

GLY

THR

7

ASP

LYS

GLU

GLN

ASP

VAL

ASP

VAL

SER

8

HIS

SER

TYR

THR

ILE

ASN

GLY

LEU

LYS

9

TYR

THR

GLU

TYR

SER

PHE

ARG

VAL

ALA

10

TYR

ASN

LYS

HIS

GLY

PRO

GLY

VAL

SER

THR

11

PRO

ASP

VAL

ALA

VAL

ARG

THR

LEU

SER

ASP

12

SER

GLY

PRO

SER

GLY

Samples:

sample_1: FN3 domain, [U-13C; U-15N], 1.9 mM; d-Tris HCl 20 mM; NaCl 100 mM; d-DTT 1 mM; NaN3 0.02%; H2O 90%; D2O 10%

condition_1: ionic strength: 120 mM; pH: 7.0; pressure: 1 atm; temperature: 298 K

Experiments:

Name	Sample	Sample state	Sample conditions
3D 15N-separated NOESY	sample_1	isotropic	condition_1
3D 13C-separated NOESY	sample_1	isotropic	condition_1

Software:

xwinnmr v3.5, Bruker - collection

NMRPipe v20031121, Delaglio, F. - processing

NMRView v5.0.4, Johnson, B.A. - data analysis

Kujira v0.9295, Kobayashi, N. - data analysis

CYANA v2.0.17, Guntert, P. - structure solution

NMR spectrometers:

Bruker AVANCE 900 MHz