BMRB Entry 11111

Click here to enlarge.

PDB ID:
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_anomalous, AVS_full, LACS
BMRB Entry DOI: doi:10.13018/BMR11111
MolProbity Validation Chart

NMR-STAR file interactive viewer.
NMR-STAR v3 text file.
XML gzip file.
RDF gzip file.
All files associated with the entry

Title:
The solution structure of the sixth fibronectin type III domain of human Neogenin
Deposition date:
2010-02-18
Original release date:
2011-02-18
Authors:
Tochio, N.; Koshiba, S.; Inoue, M.; Kigawa, T.; Yokoyama, S.
Citation:

Citation: Tochio, N.; Koshiba, S.; Inoue, M.; Kigawa, T.; Yokoyama, S.. "The solution structure of the sixth fibronectin type III domain of human Neogenin"  .

Assembly members:

Assembly members:
fn3 domain, polymer, 124 residues, Formula weight is not available

Natural source:

Natural source:   Common Name: human   Taxonomy ID: 9606   Superkingdom: Eukaryota   Kingdom: Metazoa   Genus/species: Homo sapiens

Experimental source:

Experimental source:   Production method: cell free synthesis   Host organism: E. coli - cell free   Vector: P041213-07

Entity Sequences (FASTA):

Entity Sequences (FASTA):
fn3 domain: GSSGSSGTAHGTTFELVPTS PPKDVTVVSKEGKPKTIIVN WQPPSEANGKITGYIIYYST DVNAEIHDWVIEPVVGNRLT HQIQELTLDTPYYFKIQARN SKGMGPMSEAVQFRTPKASG PSSG

Data sets:
Data typeCount
13C chemical shifts514
15N chemical shifts112
1H chemical shifts798

Additional metadata:

  • Assembly
  • Samples and Experiments
  • Software
  • Spectrometers
  • Hide all

Assembly:

Entity Assembly IDEntity NameEntity ID
1fn3 domain1

Entities:

Entity 1, fn3 domain 124 residues - Formula weight is not available

1   GLYSERSERGLYSERSERGLYTHRALAHIS
2   GLYTHRTHRPHEGLULEUVALPROTHRSER
3   PROPROLYSASPVALTHRVALVALSERLYS
4   GLUGLYLYSPROLYSTHRILEILEVALASN
5   TRPGLNPROPROSERGLUALAASNGLYLYS
6   ILETHRGLYTYRILEILETYRTYRSERTHR
7   ASPVALASNALAGLUILEHISASPTRPVAL
8   ILEGLUPROVALVALGLYASNARGLEUTHR
9   HISGLNILEGLNGLULEUTHRLEUASPTHR
10   PROTYRTYRPHELYSILEGLNALAARGASN
11   SERLYSGLYMETGLYPROMETSERGLUALA
12   VALGLNPHEARGTHRPROLYSALASERGLY
13   PROSERSERGLY

Samples:

sample_1: FN3 domain, [U-13C; U-15N], 1.3 mM; d-Tris HCl 20 mM; NaCl 100 mM; d-DTT 1 mM; NaN3 0.02%; H2O 90%; D2O 10%

condition_1: ionic strength: 120 mM; pH: 7.0; pressure: 1 atm; temperature: 298 K

Experiments:

NameSampleSample stateSample conditions
3D 15N-SEPARATED NOESYsample_1isotropiccondition_1
3D 13C-SEPARATED NOESYsample_1isotropiccondition_1

Software:

xwinnmr v2.6, Bruker - collection

NMRPipe v20031121, Delaglio, F. - processing

NMRView v5.0.4, Johnson, B.A. - data analysis

Kujira v0.9295, Kobayashi, N. - data analysis

CYANA v2.0.17, Guntert, P. - structure solution

NMR spectrometers:

  • Bruker AVANCE 800 MHz

Related Database Links:

PDB
REF XP_004056579 XP_009917344 XP_010190209

Download HSQC peak lists in one of the following formats:
CSV: Backbone or all simulated peaks
SPARKY: Backbone or all simulated peaks