BMRB Entry 11108

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PDB ID: 2diy
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_full, LACS
BMRB Entry DOI: doi:10.13018/BMR11108
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Nicholas Rego and David Koes
3Dmol.js: molecular visualization with WebGL
Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title:

The solution structure of the thioredoxin domain of human Thioredoxin-like protein 2

Deposition date:

2010-02-18

Original release date:

2011-02-18

Authors:

Tochio, N.; Koshiba, S.; Inoue, M.; Kigawa, T.; Yokoyama, S.

Citation:

Citation: Tochio, N.; Koshiba, S.; Inoue, M.; Kigawa, T.; Yokoyama, S.. "The solution structure of the thioredoxin domain of human Thioredoxin-like protein 2" .

Assembly members:

Assembly members:
Thioredoxin domain, residues 8-124, polymer, 130 residues, Formula weight is not available

Natural source:

Natural source: Common Name: human Taxonomy ID: 9606 Superkingdom: Eukaryota Kingdom: Metazoa Genus/species: Homo sapiens

Experimental source:

Experimental source: Production method: cell free synthesis Host organism: E. coli - cell free Vector: P050302-06

Entity Sequences (FASTA):

Entity Sequences (FASTA):
Thioredoxin domain, residues 8-124: GSSGSSGMAAGAAEAAVAAV EEVGSAGQFEELLRLKAKSL LVVHFWAPWAPQCAQMNEVM AELAKELPQVSFVKLEAEGV PEVSEKYEISSVPTFLFFKN SQKIDRLDGAHAPELTKKVQ RHASSGPSSG

Data sets:

assigned_chemical_shifts
- chemical_shift_1

Data type	Count
13C chemical shifts	554
15N chemical shifts	128
1H chemical shifts	867

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	Thioredoxin domain, residues 8-124	1

Entities:

Entity 1, Thioredoxin domain, residues 8-124 130 residues - Formula weight is not available

1	GLY	SER	SER	GLY	SER	SER	GLY	MET	ALA	ALA
2	GLY	ALA	ALA	GLU	ALA	ALA	VAL	ALA	ALA	VAL
3	GLU	GLU	VAL	GLY	SER	ALA	GLY	GLN	PHE	GLU
4	GLU	LEU	LEU	ARG	LEU	LYS	ALA	LYS	SER	LEU
5	LEU	VAL	VAL	HIS	PHE	TRP	ALA	PRO	TRP	ALA
6	PRO	GLN	CYS	ALA	GLN	MET	ASN	GLU	VAL	MET
7	ALA	GLU	LEU	ALA	LYS	GLU	LEU	PRO	GLN	VAL
8	SER	PHE	VAL	LYS	LEU	GLU	ALA	GLU	GLY	VAL
9	PRO	GLU	VAL	SER	GLU	LYS	TYR	GLU	ILE	SER
10	SER	VAL	PRO	THR	PHE	LEU	PHE	PHE	LYS	ASN
11	SER	GLN	LYS	ILE	ASP	ARG	LEU	ASP	GLY	ALA
12	HIS	ALA	PRO	GLU	LEU	THR	LYS	LYS	VAL	GLN
13	ARG	HIS	ALA	SER	SER	GLY	PRO	SER	SER	GLY

Name	Sample	Sample state	Sample conditions
3D 15N-SEPARATED NOESY	sample_1	isotropic	condition_1
3D 13C-SEPARATED NOESY	sample_1	isotropic	condition_1

PDB	2DIY 2WZ9
DBJ	BAG51059 BAG51067 BAG73204
EMBL	CAA09375
GB	AAF28841 AAF28844 AAH05289 AAH14372 AIC50652
REF	NP_001186797 NP_006532 XP_001090479 XP_002821331 XP_003275520
SP	O76003
AlphaFold	O76003

BMRB Entry 11108

Additional metadata:

Assembly:

Entities:

Samples:

Experiments:

Software:

NMR spectrometers:

Related Database Links:

1	GLY	SER	SER	GLY	SER	SER	GLY	MET	ALA	ALA
2	GLY	ALA	ALA	GLU	ALA	ALA	VAL	ALA	ALA	VAL
3	GLU	GLU	VAL	GLY	SER	ALA	GLY	GLN	PHE	GLU
4	GLU	LEU	LEU	ARG	LEU	LYS	ALA	LYS	SER	LEU
5	LEU	VAL	VAL	HIS	PHE	TRP	ALA	PRO	TRP	ALA
6	PRO	GLN	CYS	ALA	GLN	MET	ASN	GLU	VAL	MET
7	ALA	GLU	LEU	ALA	LYS	GLU	LEU	PRO	GLN	VAL
8	SER	PHE	VAL	LYS	LEU	GLU	ALA	GLU	GLY	VAL
9	PRO	GLU	VAL	SER	GLU	LYS	TYR	GLU	ILE	SER
10	SER	VAL	PRO	THR	PHE	LEU	PHE	PHE	LYS	ASN
11	SER	GLN	LYS	ILE	ASP	ARG	LEU	ASP	GLY	ALA
12	HIS	ALA	PRO	GLU	LEU	THR	LYS	LYS	VAL	GLN
13	ARG	HIS	ALA	SER	SER	GLY	PRO	SER	SER	GLY

1	GLY	SER	SER	GLY	SER	SER	GLY	MET	ALA	ALA
2	GLY	ALA	ALA	GLU	ALA	ALA	VAL	ALA	ALA	VAL
3	GLU	GLU	VAL	GLY	SER	ALA	GLY	GLN	PHE	GLU
4	GLU	LEU	LEU	ARG	LEU	LYS	ALA	LYS	SER	LEU
5	LEU	VAL	VAL	HIS	PHE	TRP	ALA	PRO	TRP	ALA
6	PRO	GLN	CYS	ALA	GLN	MET	ASN	GLU	VAL	MET
7	ALA	GLU	LEU	ALA	LYS	GLU	LEU	PRO	GLN	VAL
8	SER	PHE	VAL	LYS	LEU	GLU	ALA	GLU	GLY	VAL
9	PRO	GLU	VAL	SER	GLU	LYS	TYR	GLU	ILE	SER
10	SER	VAL	PRO	THR	PHE	LEU	PHE	PHE	LYS	ASN
11	SER	GLN	LYS	ILE	ASP	ARG	LEU	ASP	GLY	ALA
12	HIS	ALA	PRO	GLU	LEU	THR	LYS	LYS	VAL	GLN
13	ARG	HIS	ALA	SER	SER	GLY	PRO	SER	SER	GLY

1	GLY	SER	SER	GLY	SER	SER	GLY	MET	ALA	ALA
2	GLY	ALA	ALA	GLU	ALA	ALA	VAL	ALA	ALA	VAL
3	GLU	GLU	VAL	GLY	SER	ALA	GLY	GLN	PHE	GLU
4	GLU	LEU	LEU	ARG	LEU	LYS	ALA	LYS	SER	LEU
5	LEU	VAL	VAL	HIS	PHE	TRP	ALA	PRO	TRP	ALA
6	PRO	GLN	CYS	ALA	GLN	MET	ASN	GLU	VAL	MET
7	ALA	GLU	LEU	ALA	LYS	GLU	LEU	PRO	GLN	VAL
8	SER	PHE	VAL	LYS	LEU	GLU	ALA	GLU	GLY	VAL
9	PRO	GLU	VAL	SER	GLU	LYS	TYR	GLU	ILE	SER
10	SER	VAL	PRO	THR	PHE	LEU	PHE	PHE	LYS	ASN
11	SER	GLN	LYS	ILE	ASP	ARG	LEU	ASP	GLY	ALA
12	HIS	ALA	PRO	GLU	LEU	THR	LYS	LYS	VAL	GLN
13	ARG	HIS	ALA	SER	SER	GLY	PRO	SER	SER	GLY